JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPHS1_chr19_35820372_35857504	0/0	c0040	3726	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0041	3726	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0042	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0043	3726	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0044	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0045	3726	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0046	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0047	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0048	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0049	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0050	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0051	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0052	3726	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0053	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0054	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0055	3726	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0056	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0057	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0058	3726	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0059	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0060	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0061	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0062	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0063	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS2_chr1_179545539_179580948	0/1	c0001	1152	225	46	46	95	10	27	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0002	1152	127	17	21	68	5	16	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0003	1152	28	7	4	15	2	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	1/0	c0004	1152	23	10	2	9	0	1	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0005	1152	11	9	2	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0006	1152	5	4	1	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0007	1152	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0008	1152	1	0	0	0	1	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0009	1152	1	0	0	1	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0010	1152	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPHS2_chr1_179545539_179580948	0/0	c0011	1152	1	1	0	0	0	0	copy fasta	NPHS2	chr1	179545539	179580948
NPIPA1_chr16_14932443_14957056	0/1	c0001	1053	118	29	16	57	3	12	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0002	1110	84	8	13	48	2	13	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0003	1053	26	5	4	14	0	3	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0004	1110	9	5	1	3	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0005	1110	3	0	3	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0006	1110	2	0	0	2	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0007	984	2	0	0	2	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0008	1053	2	0	2	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0009	1053	1	0	1	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0010	1053	1	0	1	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0011	1110	1	1	0	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0012	1179	1	0	1	0	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0013	1236	1	0	0	1	0	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0014	1110	1	0	0	0	1	0	copy fasta	NPIPA1	chr16	14932443	14957056
NPIPA1_chr16_14932443_14957056	0/0	c0015	1110	1	0	0	1	0	0	copy fasta	NPIPA1	chr16	14932443	14957056