JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPA2_chr16_14737533_14770462	0/0	c0001	1110	113	38	19	43	5	8	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0002	1110	42	6	5	20	3	8	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/1	c0003	1110	32	1	9	10	2	9	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0004	1110	4	4	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0005	1110	3	3	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0006	1110	2	0	0	0	0	2	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0007	1110	2	0	0	2	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0008	1110	2	2	0	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0009	1110	1	0	1	0	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0010	1110	1	0	0	0	0	1	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0011	1110	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0012	1110	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA2_chr16_14737533_14770462	0/0	c0013	1236	1	0	0	1	0	0	copy fasta	NPIPA2	chr16	14737533	14770462
NPIPA3_chr16_14698411_14731342	0/0	c0001	1110	21	11	0	6	2	2	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	c0002	1110	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	c0003	1167	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA3_chr16_14698411_14731342	0/0	c0004	1110	1	1	0	0	0	0	copy fasta	NPIPA3	chr16	14698411	14731342
NPIPA5_chr16_15358628_15383294	0/0	c0001	1053	167	26	23	83	10	25	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0002	982	82	5	11	59	1	6	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0003	1110	52	1	14	30	0	7	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0004	1053	29	27	2	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0005	1053	27	4	17	0	3	3	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0006	1053	25	9	1	13	0	2	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0007	1053	13	0	6	1	4	2	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0008	1110	5	0	0	5	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0009	1053	3	3	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0010	1053	2	2	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0011	1053	2	0	1	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0012	1053	2	0	0	2	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0013	1110	2	1	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0014	1053	2	0	2	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0015	1053	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0016	986	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0017	1053	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0018	1053	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0019	1110	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0020	1110	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0021	984	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0022	1053	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0023	1053	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0024	982	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0025	1053	1	0	0	1	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0026	984	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0027	1053	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0028	1053	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0029	1053	1	0	0	0	0	1	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0030	1053	1	1	0	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA5_chr16_15358628_15383294	0/0	c0031	1053	1	0	1	0	0	0	copy fasta	NPIPA5	chr16	15358628	15383294
NPIPA7_chr16_16374140_16398972	0/0	c0001	1110	81	16	24	25	3	13	copy fasta	NPIPA7	chr16	16374140	16398972
NPIPA7_chr16_16374140_16398972	0/0	c0002	1110	14	2	1	7	0	4	copy fasta	NPIPA7	chr16	16374140	16398972