JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB12_chr16_29478534_29511408	0/0	c0014	1911	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB13_chr16_30217897_30253479	0/0	c0001	3177	16	0	6	8	1	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0002	3303	15	2	2	11	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0003	3543	9	1	1	5	0	2	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0004	3177	9	1	3	5	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0005	3417	7	0	0	6	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0006	3486	5	0	3	1	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0007	3543	3	0	0	3	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0008	3543	3	3	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0009	3291	3	0	0	1	2	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0010	3612	2	2	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0011	3612	2	2	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0012	3543	2	0	0	2	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0013	3417	2	0	1	0	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0014	3051	2	0	0	2	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0015	3543	2	0	0	1	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0016	3486	2	2	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0017	3360	2	0	2	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0018	3177	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0019	3177	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0020	3303	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0021	4053	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0022	3165	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0023	3303	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0024	5049	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0025	3543	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0026	3417	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0027	3555	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0028	3486	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0029	3486	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0030	3877	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0031	3486	1	0	0	0	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0032	3360	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0033	3360	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0034	3234	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0035	3360	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0036	3234	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0037	3642	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0038	3303	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0039	3543	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0040	3405	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0041	3543	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0042	3543	1	0	0	0	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0043	3669	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0044	3417	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0045	3417	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0046	3417	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0047	3291	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0048	3921	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0049	3429	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479