JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB13_chr16_30217897_30253479	0/0	c0050	3681	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0051	3301	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0052	3303	1	0	0	0	1	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0053	3051	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0054	3177	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0055	3429	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0056	3303	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0057	3051	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0058	3290	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0059	3555	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0060	3303	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0061	3120	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0062	3669	1	0	0	0	0	1	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	1/0	c0063	3417	1	0	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0064	3669	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0065	3291	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0066	3291	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0067	3417	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0068	3303	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0069	3177	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0070	3543	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0071	3612	1	1	0	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0072	3360	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0073	3234	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0074	3360	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0075	3486	1	0	1	0	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	c0076	3417	1	0	0	1	0	0	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB15_chr16_74371306_74397115	0/0	c0001	1332	93	8	14	61	0	10	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	1/0	c0002	1332	57	11	12	27	0	6	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0003	1332	41	11	4	25	1	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0004	1317	38	4	9	22	1	2	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0005	1332	6	2	3	0	0	1	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0006	1332	4	4	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0007	249	3	0	1	2	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0008	1332	3	0	0	3	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0009	1317	3	3	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0010	1269	2	2	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0011	1332	2	2	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0012	1332	2	0	0	0	0	2	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0013	1332	1	1	0	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0014	1332	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0015	1332	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0016	1332	1	0	0	0	0	1	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0017	1332	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0018	1332	1	0	1	0	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB15_chr16_74371306_74397115	0/0	c0019	1332	1	0	0	1	0	0	copy fasta	NPIPB15	chr16	74371306	74397115
NPIPB2_chr16_11922373_11947045	0/1	c0001	1192	174	11	37	91	15	19	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0002	1150	45	12	12	19	0	2	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0003	1192	37	0	12	19	1	5	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0004	1192	36	5	8	20	0	3	copy fasta	NPIPB2	chr16	11922373	11947045