JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB2_chr16_11922373_11947045	0/0	c0005	1150	25	2	3	20	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0006	1150	21	18	2	0	1	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	1/0	c0007	1194	12	11	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0008	1192	10	7	3	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0009	1224	5	0	0	0	0	5	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0010	1192	5	4	1	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0011	1192	4	0	0	0	1	3	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0012	1192	4	0	0	4	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0013	1227	4	4	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0014	1234	2	2	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0015	1093	2	2	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0016	1152	2	2	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0017	1149	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0018	1194	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0019	1185	1	0	0	0	0	1	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0020	1192	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0021	1276	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0022	1234	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0023	1192	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0024	1234	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0025	1192	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0026	1135	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0027	1150	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0028	1150	1	0	1	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0029	1150	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0030	1147	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0031	1192	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0032	1194	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0033	1135	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0034	1150	1	0	1	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0035	1192	1	0	0	0	0	1	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0036	1192	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0037	1192	1	0	0	0	0	1	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0038	1192	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0039	1135	1	0	0	0	0	1	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0040	1192	1	1	0	0	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0041	1192	1	0	0	1	0	0	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB2_chr16_11922373_11947045	0/0	c0042	1192	1	0	0	0	0	1	copy fasta	NPIPB2	chr16	11922373	11947045
NPIPB4_chr16_21829582_21862756	0/0	c0001	3291	17	0	4	11	0	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0002	3417	16	0	9	1	2	4	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0003	2913	11	1	2	8	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0004	3543	9	0	4	3	0	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0005	3291	8	8	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0006	3543	7	0	4	3	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0007	3417	6	0	5	0	1	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0008	3417	5	0	3	0	0	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0009	2787	5	0	0	5	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0010	3543	5	0	0	5	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0011	3291	4	0	2	0	1	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0012	3330	4	0	2	0	0	2	copy fasta	NPIPB4	chr16	21829582	21862756