JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB4_chr16_21829582_21862756	0/0	c0013	3417	4	2	2	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0014	3165	3	3	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0015	3543	3	0	0	1	0	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0016	3543	3	0	0	0	1	2	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0017	3153	2	0	2	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0018	3291	2	1	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0019	3165	2	1	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0020	3543	2	2	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0021	3543	2	0	0	2	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0022	3291	2	1	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0023	3291	2	2	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0024	3165	2	0	1	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0025	3165	2	0	2	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0026	3417	2	0	0	2	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0027	3543	2	0	0	1	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0028	3291	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0029	3543	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0030	3738	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0031	3165	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0032	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0033	3417	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0034	3417	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0035	3417	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0036	3417	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0037	3165	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0038	3417	1	0	0	0	1	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0039	2774	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0040	3190	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0041	3039	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0042	3033	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0043	3291	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0044	3165	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0045	2787	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0046	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0047	3669	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0048	3165	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0049	3165	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0050	3417	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0051	3417	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0052	3417	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0053	3417	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0054	3330	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0055	3795	1	0	0	0	1	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0056	3184	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0057	3708	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0058	3795	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0059	3543	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0060	3543	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0061	3405	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0062	3405	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756