JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB4_chr16_21829582_21862756	0/0	c0063	3429	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0064	3417	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0065	3360	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0066	3291	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0067	3417	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0068	3543	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0069	3417	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0070	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0071	3417	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0072	3165	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0073	3051	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0074	3291	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0075	3291	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0076	3039	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0077	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0078	3165	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0079	3039	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0080	3669	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0081	3039	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0082	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0083	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0084	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0085	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0086	3669	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0087	3417	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0088	3417	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0089	3543	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0090	3795	1	0	0	0	0	1	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0091	3290	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0092	3417	1	0	0	0	1	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0093	3543	1	0	1	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0094	3417	1	1	0	0	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0095	2913	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0096	3291	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0097	2913	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0098	3442	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB4_chr16_21829582_21862756	0/0	c0099	2799	1	0	0	1	0	0	copy fasta	NPIPB4	chr16	21829582	21862756
NPIPB5_chr16_22505891_22541535	1/0	c0001	3402	11	0	0	6	2	2	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0002	3402	2	0	2	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0003	3441	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0004	3780	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0005	3780	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0006	3402	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0007	3528	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0008	3402	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0009	3024	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0010	3642	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0011	3768	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0012	3768	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0013	2898	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535