JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB5_chr16_22505891_22541535	0/0	c0014	3150	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0015	3150	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0016	3402	1	0	0	0	1	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0017	3402	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0018	3402	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0019	3402	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0020	3402	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0021	3402	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0022	3276	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0023	3654	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0024	3654	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0025	3585	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0026	3654	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0027	4158	1	0	0	0	1	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0028	3540	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0029	3402	1	0	0	1	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0030	3654	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0031	3414	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0032	3150	1	0	0	0	0	1	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0033	3390	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0034	3735	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0035	3682	1	0	1	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB5_chr16_22505891_22541535	0/0	c0036	3768	1	1	0	0	0	0	copy fasta	NPIPB5	chr16	22505891	22541535
NPIPB6_chr16_28337517_28368508	1/0	c0001	1278	167	25	18	95	5	23	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0002	1299	43	2	17	14	3	7	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0003	1299	35	0	11	21	0	3	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0004	1299	25	24	1	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0005	1236	21	2	2	17	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0006	1278	7	6	1	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0007	1299	5	1	0	4	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0008	1278	5	3	1	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0009	1278	5	0	0	5	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0010	1278	4	0	1	0	3	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0011	1299	3	0	0	3	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0012	1299	3	3	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0013	1341	3	0	3	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0014	1278	3	3	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0015	1236	3	0	3	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0016	1341	2	0	1	0	1	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0017	1341	2	0	0	2	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0018	1299	2	0	1	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0019	1278	2	0	0	0	0	2	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0020	1236	2	2	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0021	1278	2	0	1	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0022	1299	1	0	1	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0023	1299	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0024	1301	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0025	1278	1	0	0	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0026	1278	1	0	0	0	0	1	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0027	1278	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508