JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB6_chr16_28337517_28368508	0/0	c0028	1299	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0029	1236	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0030	1299	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0031	1278	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0032	1236	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0033	1278	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0034	1299	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0035	1278	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0036	1278	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0037	1278	1	0	0	1	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB6_chr16_28337517_28368508	0/0	c0038	1278	1	1	0	0	0	0	copy fasta	NPIPB6	chr16	28337517	28368508
NPIPB7_chr16_28451329_28477336	1/0	c0001	1245	135	20	20	64	4	26	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0002	1287	67	2	34	23	3	5	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0003	1245	33	15	1	16	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0004	1182	24	0	0	23	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0005	1255	17	0	0	17	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0006	1287	15	14	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0007	1245	12	2	3	0	2	5	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0008	1245	8	0	0	8	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0009	1245	6	5	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0010	1255	6	6	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0011	1245	5	0	0	5	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0012	1287	4	0	4	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0013	1287	3	0	1	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0014	1245	3	0	1	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0015	1255	3	3	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0016	1287	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0017	1224	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0018	1287	2	0	0	2	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0019	1287	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0020	1245	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0021	1192	2	2	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0022	1288	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0023	1287	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0024	1223	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0025	1287	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0026	1287	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0027	1245	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/1	c0028	1287	1	0	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0029	1287	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0030	1287	1	0	0	0	1	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0031	1245	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0032	1245	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0033	1224	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0034	1287	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0035	1245	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0036	1245	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0037	1245	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0038	1182	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0039	1255	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336