JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB7_chr16_28451329_28477336	0/0	c0040	1245	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0041	1245	1	1	0	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0042	1245	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0043	1245	1	0	1	0	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0044	1069	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0045	1287	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0046	1181	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0047	1224	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0048	1245	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0049	1245	1	0	0	0	0	1	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB7_chr16_28451329_28477336	0/0	c0050	1245	1	0	0	1	0	0	copy fasta	NPIPB7	chr16	28451329	28477336
NPIPB8_chr16_28633065_28663744	0/0	c0001	1299	185	11	19	115	6	34	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0002	1299	35	2	16	10	2	5	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0003	1299	24	1	9	10	2	2	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0004	1309	9	9	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0005	1341	8	1	5	1	1	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0006	1299	8	1	4	0	2	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0007	1299	7	7	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0008	1309	6	6	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0009	1299	6	5	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0010	1299	6	6	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0011	1299	3	0	1	1	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0012	1299	3	3	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0013	1299	3	2	0	0	1	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0014	1299	2	0	1	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0015	1309	2	2	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0016	1299	2	0	1	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0017	1299	2	0	1	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0018	1299	2	0	0	2	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	1/0	c0019	1299	2	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0020	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0021	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0022	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0023	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0024	1299	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0025	1299	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0026	1236	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0027	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0028	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0029	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0030	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0031	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0032	1299	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0033	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0034	1309	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0035	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0036	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0037	1299	1	0	1	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0038	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0039	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744