JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOB_chr2_20996429_21049073	0/0	c0084	13692	1	0	0	0	1	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0085	13692	1	0	0	0	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0086	13692	1	0	0	0	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0087	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0088	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0089	13692	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0090	13692	1	0	0	0	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0091	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0092	13692	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0093	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0094	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0095	13692	1	0	0	0	1	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0096	13692	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0097	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0098	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0099	13692	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0100	13692	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0101	13692	1	0	0	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0102	13692	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0103	13692	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0104	13692	1	1	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0105	13692	1	0	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOC1_chr19_44909608_44924346	1/1	c0001	252	432	98	78	190	18	46	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	c0002	252	2	0	2	0	0	0	copy fasta	APOC1	chr19	44909608	44924346
APOC1_chr19_44909608_44924346	0/0	c0003	252	2	0	2	0	0	0	copy fasta	APOC1	chr19	44909608	44924346
APOC2_chr19_44941051_44954565	1/1	c0001	306	392	88	77	169	14	42	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	c0002	306	2	1	1	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	c0003	306	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	c0004	306	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	c0005	306	1	1	0	0	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC2_chr19_44941051_44954565	0/0	c0006	306	1	0	0	1	0	0	copy fasta	APOC2	chr19	44941051	44954565
APOC3_chr11_116824907_116838072	0/1	c0001	300	241	62	44	93	14	27	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	1/0	c0002	300	205	29	31	119	4	21	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/0	c0003	300	2	1	1	0	0	0	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/0	c0004	300	1	0	0	1	0	0	copy fasta	APOC3	chr11	116824907	116838072
APOC3_chr11_116824907_116838072	0/0	c0005	300	1	0	0	1	0	0	copy fasta	APOC3	chr11	116824907	116838072
APOC4_chr19_44937237_44950496	0/1	c0001	384	187	37	29	94	8	18	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	1/0	c0002	384	111	29	25	39	4	13	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	c0003	384	85	20	24	26	2	13	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	c0004	384	6	6	0	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	c0005	384	5	0	0	5	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	c0006	384	2	0	0	2	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	c0007	384	1	1	0	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOC4_chr19_44937237_44950496	0/0	c0008	384	1	1	0	0	0	0	copy fasta	APOC4	chr19	44937237	44950496
APOD_chr3_195563705_195588940	1/1	c0001	570	432	91	79	197	16	47	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	c0002	570	1	0	1	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	c0003	570	1	1	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	c0004	570	1	1	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	c0005	570	1	0	0	1	0	0	copy fasta	APOD	chr3	195563705	195588940
APOD_chr3_195563705_195588940	0/0	c0006	570	1	1	0	0	0	0	copy fasta	APOD	chr3	195563705	195588940