JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB8_chr16_28633065_28663744	0/0	c0040	1236	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0041	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0042	1236	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0043	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0044	1299	1	0	0	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0045	1309	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0046	1274	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0047	1278	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0048	1278	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0049	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0050	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0051	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0052	1299	1	0	0	1	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0053	1299	1	0	0	0	0	1	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0054	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB8_chr16_28633065_28663744	0/0	c0055	1299	1	1	0	0	0	0	copy fasta	NPIPB8	chr16	28633065	28663744
NPIPB9_chr16_28746787_28777864	0/0	c0001	1278	54	2	6	39	1	6	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	1/0	c0002	1299	40	1	2	33	0	3	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0003	1341	11	0	0	2	0	9	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0004	1278	10	10	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0005	1278	8	0	0	8	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0006	1278	7	5	2	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0007	1299	5	0	0	5	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0008	1341	4	0	1	1	1	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0009	1299	3	0	0	3	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0010	1341	3	3	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0011	1299	2	0	1	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0012	1278	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0013	1278	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0014	1341	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0015	1299	2	1	1	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0016	1341	2	0	0	0	0	2	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0017	1299	2	1	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0018	1341	2	0	0	2	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0019	1278	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0020	1299	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0021	1299	1	0	1	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0022	1278	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0023	1278	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0024	1278	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0025	1277	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0026	1299	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0027	1281	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0028	1236	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0029	1278	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0030	1341	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0031	1278	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0032	1236	1	0	0	1	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0033	1278	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0034	1278	1	0	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864