JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPIPB9_chr16_28746787_28777864	0/0	c0035	1341	1	0	0	0	0	1	copy fasta	NPIPB9	chr16	28746787	28777864
NPIPB9_chr16_28746787_28777864	0/0	c0036	1341	1	1	0	0	0	0	copy fasta	NPIPB9	chr16	28746787	28777864
NPLOC4_chr17_81551887_81642112	0/0	c0001	1827	142	41	25	57	4	15	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0002	1827	51	6	1	39	0	5	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	1/0	c0003	1827	46	12	20	0	6	7	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0004	1827	26	2	10	9	2	3	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0005	1827	15	7	3	0	1	4	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0006	1827	14	11	3	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0007	1827	12	0	4	5	0	3	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0008	1827	11	0	6	0	0	5	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0009	1827	9	0	0	7	2	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0010	1827	6	0	5	0	1	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0011	1827	3	3	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0012	1827	2	2	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/1	c0013	1827	1	0	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0014	1827	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0015	1827	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0016	1827	1	1	0	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0017	1827	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0018	1827	1	0	0	1	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPLOC4_chr17_81551887_81642112	0/0	c0019	1827	1	0	1	0	0	0	copy fasta	NPLOC4	chr17	81551887	81642112
NPL_chr1_182784773_182835384	1/1	c0001	963	286	66	55	122	14	27	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0002	963	27	21	2	1	0	3	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0003	963	6	6	0	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0004	963	3	0	1	2	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0005	963	1	1	0	0	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0006	963	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0007	963	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPL_chr1_182784773_182835384	0/0	c0008	963	1	0	0	1	0	0	copy fasta	NPL	chr1	182784773	182835384
NPM1_chr5_171382849_171415900	1/1	c0001	885	398	90	73	181	14	38	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	c0002	885	2	1	1	0	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	c0003	885	1	0	0	1	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM1_chr5_171382849_171415900	0/0	c0004	885	1	1	0	0	0	0	copy fasta	NPM1	chr5	171382849	171415900
NPM2_chr8_22019134_22041897	1/1	c0001	645	414	78	80	196	16	42	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	c0002	645	10	10	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	c0003	645	5	5	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	c0004	639	3	3	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	c0005	645	1	1	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM2_chr8_22019134_22041897	0/0	c0006	645	1	1	0	0	0	0	copy fasta	NPM2	chr8	22019134	22041897
NPM3_chr10_101776325_101788446	1/1	c0001	537	372	90	66	160	18	36	copy fasta	NPM3	chr10	101776325	101788446
NPNT_chr4_105890471_105976671	0/0	c0001	1698	103	28	27	27	6	15	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/1	c0002	1698	84	21	11	31	6	14	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	1/0	c0003	1698	26	17	5	0	2	1	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0004	1698	6	6	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0005	1698	4	4	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0006	1698	2	2	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0007	1698	2	2	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0008	1698	2	1	1	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0009	1698	2	0	0	2	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0010	1698	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671