JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPNT_chr4_105890471_105976671	0/0	c0011	1698	1	0	1	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0012	1698	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0013	1698	1	1	0	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPNT_chr4_105890471_105976671	0/0	c0014	1698	1	0	1	0	0	0	copy fasta	NPNT	chr4	105890471	105976671
NPPA_chr1_11840709_11852783	1/1	c0001	456	265	37	54	120	15	37	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0002	456	65	47	6	3	3	6	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0003	456	30	3	4	20	0	3	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0004	456	2	2	0	0	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0005	456	1	0	0	1	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0006	456	1	0	0	1	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0007	456	1	1	0	0	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPA_chr1_11840709_11852783	0/0	c0008	456	1	0	0	1	0	0	copy fasta	NPPA	chr1	11840709	11852783
NPPB_chr1_11852464_11863945	1/1	c0001	405	401	83	70	180	18	48	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	c0002	405	5	5	0	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	c0003	405	1	0	0	1	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	c0004	405	1	0	1	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	c0005	405	1	0	0	1	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPB_chr1_11852464_11863945	0/0	c0006	405	1	0	1	0	0	0	copy fasta	NPPB	chr1	11852464	11863945
NPPC_chr2_231916809_231931396	1/1	c0001	381	430	98	79	190	16	45	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	c0002	381	3	0	0	3	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	c0003	381	3	0	3	0	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	c0004	381	2	0	0	2	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	c0005	381	1	0	0	0	0	1	copy fasta	NPPC	chr2	231916809	231931396
NPPC_chr2_231916809_231931396	0/0	c0006	381	1	0	0	1	0	0	copy fasta	NPPC	chr2	231916809	231931396
NPR1_chr1_153673688_153698992	1/1	c0001	3186	280	64	50	125	12	27	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0002	3186	31	18	6	0	2	5	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0003	3186	16	0	3	13	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0004	3186	7	3	0	2	0	2	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0005	3186	2	2	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0006	3186	2	2	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0007	3186	1	0	0	0	0	1	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0008	3186	1	1	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0009	3186	1	0	0	1	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0010	3186	1	1	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0011	3186	1	0	0	1	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0012	3186	1	0	0	0	0	1	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0013	3186	1	1	0	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR1_chr1_153673688_153698992	0/0	c0014	3186	1	0	1	0	0	0	copy fasta	NPR1	chr1	153673688	153698992
NPR2_chr9_35786591_35814731	1/1	c0001	3144	266	43	52	129	10	30	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	c0002	3144	143	43	22	68	2	8	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	c0003	3144	2	0	0	2	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	c0004	3144	2	0	0	2	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	c0005	3144	1	1	0	0	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	c0006	3144	1	1	0	0	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR2_chr9_35786591_35814731	0/0	c0007	3144	1	0	0	1	0	0	copy fasta	NPR2	chr9	35786591	35814731
NPR3_chr5_32706321_32796720	1/1	c0001	1626	235	64	46	91	8	24	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	c0002	1626	68	8	11	33	4	12	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	c0003	1626	14	13	1	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	c0004	1626	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPR3_chr5_32706321_32796720	0/0	c0005	1626	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720