JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPR3_chr5_32706321_32796720	0/0	c0006	1626	1	1	0	0	0	0	copy fasta	NPR3	chr5	32706321	32796720
NPRL2_chr3_50342330_50355775	1/1	c0001	1143	355	84	70	155	14	30	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	c0002	1143	2	2	0	0	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL2_chr3_50342330_50355775	0/0	c0003	1143	1	0	0	1	0	0	copy fasta	NPRL2	chr3	50342330	50355775
NPRL3_chr16_80386_143673	1/1	c0001	1710	308	71	56	133	9	37	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0002	1710	18	1	3	14	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0003	1710	5	3	0	0	0	2	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0004	1710	4	4	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0005	1710	3	0	2	0	1	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0006	1710	2	2	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0007	1710	2	2	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0008	1710	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0009	1710	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0010	1710	1	0	1	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0011	1710	1	0	0	1	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0012	1710	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0013	1710	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0014	1710	1	1	0	0	0	0	copy fasta	NPRL3	chr16	80386	143673
NPRL3_chr16_80386_143673	0/0	c0015	1710	1	0	0	0	0	1	copy fasta	NPRL3	chr16	80386	143673
NPSR1_chr7_34653218_34854978	1/1	c0001	1116	51	9	7	27	1	5	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0002	1116	36	17	8	2	4	5	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0003	1116	30	15	6	7	1	1	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0004	1116	23	9	5	2	0	7	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0005	1116	19	9	6	3	0	1	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0006	1116	18	1	3	13	1	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0007	1116	14	1	1	7	2	3	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0008	1116	13	2	0	9	0	2	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0009	1116	11	0	5	4	2	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0010	1116	9	1	1	7	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0011	1116	5	0	0	5	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0012	1116	5	0	4	0	1	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0013	1116	4	2	0	2	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0014	1116	4	4	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0015	1116	2	2	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0016	1116	2	2	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0017	1116	2	0	1	0	0	1	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0018	1116	1	0	1	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0019	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0020	1116	1	0	0	1	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0021	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0022	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0023	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0024	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0025	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0026	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0027	1116	1	0	0	1	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0028	1116	1	1	0	0	0	0	copy fasta	NPSR1	chr7	34653218	34854978
NPSR1_chr7_34653218_34854978	0/0	c0029	1116	1	0	0	0	0	1	copy fasta	NPSR1	chr7	34653218	34854978
NPS_chr10_127544309_127558540	1/1	c0001	270	403	67	72	209	12	41	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	c0002	270	55	32	5	15	0	3	copy fasta	NPS	chr10	127544309	127558540