JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPS_chr10_127544309_127558540	0/0	c0003	270	5	0	1	0	2	2	copy fasta	NPS	chr10	127544309	127558540
NPS_chr10_127544309_127558540	0/0	c0004	270	1	1	0	0	0	0	copy fasta	NPS	chr10	127544309	127558540
NPTN_chr15_73555014_73638389	1/1	c0001	1197	340	76	58	162	8	34	copy fasta	NPTN	chr15	73555014	73638389
NPTN_chr15_73555014_73638389	0/0	c0002	1197	2	2	0	0	0	0	copy fasta	NPTN	chr15	73555014	73638389
NPTX1_chr17_80461834_80481607	0/1	c0001	1299	205	48	46	80	9	21	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0002	1299	91	0	7	75	2	7	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	1/0	c0003	1299	69	3	13	47	1	4	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0004	1299	23	1	11	1	5	5	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0005	1299	17	15	0	0	0	2	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0006	1299	16	15	1	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0007	1299	5	5	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0008	1299	2	2	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0009	1299	2	2	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0010	1299	2	0	0	2	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0011	1299	2	2	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0012	1299	1	0	0	0	0	1	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0013	1299	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0014	1299	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0015	1299	1	0	0	0	1	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0016	1299	1	0	0	1	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX1_chr17_80461834_80481607	0/0	c0017	1299	1	1	0	0	0	0	copy fasta	NPTX1	chr17	80461834	80481607
NPTX2_chr7_98612285_98634869	1/1	c0001	1296	393	88	62	185	18	38	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0002	1296	7	7	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0003	1296	4	0	0	0	0	4	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0004	1296	2	2	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0005	1296	1	1	0	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0006	1296	1	0	1	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0007	1296	1	0	0	1	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0008	1296	1	0	1	0	0	0	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0009	1296	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTX2_chr7_98612285_98634869	0/0	c0010	1296	1	0	0	0	0	1	copy fasta	NPTX2	chr7	98612285	98634869
NPTXR_chr22_38813452_38849028	0/0	c0001	1503	158	29	22	83	5	19	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	1/0	c0002	1503	150	43	45	35	8	18	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0003	1503	21	4	3	11	0	3	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/1	c0004	1503	7	0	5	0	1	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0005	1503	6	5	1	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0006	1503	4	4	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0007	1503	3	3	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0008	1503	1	0	0	1	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0009	1503	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0010	1503	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0011	1503	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPTXR_chr22_38813452_38849028	0/0	c0012	1503	1	1	0	0	0	0	copy fasta	NPTXR	chr22	38813452	38849028
NPVF_chr7_25219570_25233486	1/0	c0001	591	177	52	25	78	4	17	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/1	c0002	591	152	9	21	101	4	16	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	c0003	588	63	14	9	30	1	9	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	c0004	591	48	19	21	1	3	4	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	c0005	591	8	0	4	0	4	0	copy fasta	NPVF	chr7	25219570	25233486
NPVF_chr7_25219570_25233486	0/0	c0006	591	2	0	0	2	0	0	copy fasta	NPVF	chr7	25219570	25233486
NPW_chr16_2014785_2025755	1/0	c0001	498	270	41	62	119	9	38	copy fasta	NPW	chr16	2014785	2025755