JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPW_chr16_2014785_2025755	0/0	c0002	498	96	35	7	51	1	2	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/1	c0003	498	25	4	11	0	6	3	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/0	c0004	498	19	17	2	0	0	0	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/0	c0005	498	1	0	0	0	0	1	copy fasta	NPW	chr16	2014785	2025755
NPW_chr16_2014785_2025755	0/0	c0006	498	1	1	0	0	0	0	copy fasta	NPW	chr16	2014785	2025755
NPY1R_chr4_163318962_163337596	1/1	c0001	1155	411	88	73	192	16	40	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	c0002	1155	4	4	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	c0003	1155	2	2	0	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY1R_chr4_163318962_163337596	0/0	c0004	1155	1	0	1	0	0	0	copy fasta	NPY1R	chr4	163318962	163337596
NPY2R_chr4_155203636_155222076	0/0	c0001	1146	327	73	48	172	9	25	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	1/1	c0002	1146	113	3	36	43	9	20	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0003	1146	18	14	0	4	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0004	1146	2	2	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0005	1146	1	0	0	1	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0006	1146	1	0	1	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0007	1146	1	0	0	0	0	1	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0008	1146	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0009	1146	1	0	1	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0010	1146	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0011	1146	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY2R_chr4_155203636_155222076	0/0	c0012	1146	1	1	0	0	0	0	copy fasta	NPY2R	chr4	155203636	155222076
NPY4R2_chr10_47913662_47928524	0/0	c0001	1128	104	23	22	41	4	14	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0002	1128	83	4	4	71	2	2	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0003	1128	56	20	7	23	2	4	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0004	1128	7	0	4	1	2	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0005	1128	7	5	1	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0006	1128	4	4	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0007	1128	2	2	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0008	1128	2	2	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0009	1128	2	0	0	2	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0010	1128	2	0	0	2	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0011	1128	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0012	1128	1	0	0	0	0	1	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0013	1128	1	0	0	0	0	1	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0014	1128	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0015	1128	1	1	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0016	1128	1	1	0	0	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R2_chr10_47913662_47928524	0/0	c0017	1128	1	0	0	1	0	0	copy fasta	NPY4R2	chr10	47913662	47928524
NPY4R_chr10_46456099_46470958	0/0	c0001	1128	160	5	23	117	3	12	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0002	1128	70	19	18	28	0	5	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0003	1128	19	4	6	3	0	6	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0004	1128	10	6	4	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0005	1128	7	7	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0006	1128	6	6	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0007	1128	5	2	2	0	1	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0008	1128	3	3	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0009	1128	2	2	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0010	1128	2	0	0	2	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0011	1128	1	1	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0012	1128	1	0	0	1	0	0	copy fasta	NPY4R	chr10	46456099	46470958