JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPY4R_chr10_46456099_46470958	0/0	c0013	1128	1	0	0	1	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0014	1128	1	1	0	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0015	1128	1	0	1	0	0	0	copy fasta	NPY4R	chr10	46456099	46470958
NPY4R_chr10_46456099_46470958	0/0	c0016	1128	1	0	0	0	0	1	copy fasta	NPY4R	chr10	46456099	46470958
NPY5R_chr4_163338892_163356934	1/1	c0001	1338	395	82	67	194	12	38	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	c0002	1338	44	12	3	26	0	3	copy fasta	NPY5R	chr4	163338892	163356934
NPY5R_chr4_163338892_163356934	0/0	c0003	1338	1	0	0	0	0	1	copy fasta	NPY5R	chr4	163338892	163356934
NPY_chr7_24279190_24296862	1/0	c0001	294	194	52	30	84	7	20	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/1	c0002	294	172	32	39	73	7	20	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	c0003	294	99	2	13	76	0	8	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	c0004	294	7	5	2	0	0	0	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	c0005	294	1	0	0	0	0	1	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	c0006	294	1	0	0	0	0	1	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	c0007	294	1	1	0	0	0	0	copy fasta	NPY	chr7	24279190	24296862
NPY_chr7_24279190_24296862	0/0	c0008	294	1	0	0	1	0	0	copy fasta	NPY	chr7	24279190	24296862
NQO1_chr16_69704401_69731560	1/1	c0001	825	285	72	44	130	10	27	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0002	825	127	13	26	71	5	12	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0003	825	18	1	5	6	2	4	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0004	825	7	4	1	0	1	1	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0005	825	4	4	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0006	825	1	1	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0007	825	1	0	0	1	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO1_chr16_69704401_69731560	0/0	c0008	825	1	1	0	0	0	0	copy fasta	NQO1	chr16	69704401	69731560
NQO2_chr6_2994894_3024755	0/0	c0001	696	218	43	49	95	8	23	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	1/1	c0002	696	117	1	20	79	2	13	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0003	696	83	39	7	33	1	3	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0004	696	7	5	1	0	1	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0005	696	6	3	0	0	3	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0006	696	6	1	2	0	1	2	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0007	696	2	0	1	0	0	1	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0008	696	2	0	0	2	0	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0009	696	2	2	0	0	0	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0010	696	1	0	0	1	0	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0011	696	1	0	0	1	0	0	copy fasta	NQO2	chr6	2994894	3024755
NQO2_chr6_2994894_3024755	0/0	c0012	696	1	0	0	1	0	0	copy fasta	NQO2	chr6	2994894	3024755
NR0B1_chrX_30299206_30314390	0/0	c0001	1413	165	39	21	90	0	15	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	1/1	c0002	1413	116	31	37	27	10	9	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0003	1413	25	1	2	16	3	3	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0004	1413	3	0	0	3	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0005	1413	2	1	1	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0006	1413	2	0	0	2	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0007	1413	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0008	1414	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0009	1412	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0010	1414	1	0	1	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0011	1413	1	1	0	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0012	1414	1	0	1	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0013	1413	1	1	0	0	0	0	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0014	1414	1	0	0	0	0	1	copy fasta	NR0B1	chrX	30299206	30314390
NR0B1_chrX_30299206_30314390	0/0	c0015	1414	1	0	0	1	0	0	copy fasta	NR0B1	chrX	30299206	30314390