JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NR0B2_chr1_26906489_26918975	1/1	c0001	774	296	75	58	108	12	41	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	c0002	774	15	7	3	0	4	1	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	c0003	774	4	4	0	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR0B2_chr1_26906489_26918975	0/0	c0004	774	1	0	1	0	0	0	copy fasta	NR0B2	chr1	26906489	26918975
NR1D1_chr17_40087793_40105589	1/1	c0001	1845	408	84	71	188	16	47	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0002	1845	8	7	1	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0003	1845	4	3	1	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0004	1845	3	3	0	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0005	1834	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0006	1845	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0007	1845	1	1	0	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0008	1845	1	0	1	0	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0009	1845	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0010	1845	1	0	0	1	0	0	copy fasta	NR1D1	chr17	40087793	40105589
NR1D1_chr17_40087793_40105589	0/0	c0011	1845	1	0	0	0	0	1	copy fasta	NR1D1	chr17	40087793	40105589
NR1D2_chr3_23940286_23985617	1/1	c0001	1740	344	70	73	149	12	38	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0002	1740	10	0	0	4	0	6	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0003	1740	9	8	1	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0004	1740	3	0	0	3	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0005	1740	3	0	3	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0006	1740	2	2	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0007	1740	2	0	2	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0008	1740	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0009	1740	1	0	1	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0010	1740	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0011	1740	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0012	1740	1	0	0	1	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0013	1740	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1D2_chr3_23940286_23985617	0/0	c0014	1740	1	1	0	0	0	0	copy fasta	NR1D2	chr3	23940286	23985617
NR1H2_chr19_50371457_50388388	0/1	c0001	1386	193	35	41	78	8	30	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0002	1386	109	29	23	39	5	13	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	1/0	c0003	1383	19	0	4	9	1	4	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0004	1386	12	10	2	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0005	1386	10	9	1	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0006	1386	8	0	0	8	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0007	1386	6	6	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0008	1386	3	3	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0009	1386	2	0	0	2	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0010	1386	2	0	0	0	2	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0011	1386	2	2	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0012	1386	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0013	1386	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0014	1362	1	0	0	0	0	1	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0015	1386	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0016	1386	1	0	1	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0017	1386	1	0	0	1	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0018	1386	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H2_chr19_50371457_50388388	0/0	c0019	1386	1	1	0	0	0	0	copy fasta	NR1H2	chr19	50371457	50388388
NR1H3_chr11_47252996_47274033	1/0	c0001	1344	214	42	54	66	15	36	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/1	c0002	1344	139	47	20	64	1	6	copy fasta	NR1H3	chr11	47252996	47274033