JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NR1H3_chr11_47252996_47274033	0/0	c0003	1344	7	0	0	7	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	c0004	1344	4	4	0	0	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	c0005	1344	1	0	1	0	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	c0006	1344	1	1	0	0	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	c0007	1344	1	0	0	1	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H3_chr11_47252996_47274033	0/0	c0008	1344	1	0	1	0	0	0	copy fasta	NR1H3	chr11	47252996	47274033
NR1H4_chr12_100468866_100569414	1/1	c0001	1431	298	74	42	136	11	33	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0002	1431	2	2	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0003	1431	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0004	1431	1	1	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0005	1431	1	1	0	0	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0006	1431	1	0	0	0	1	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0007	1431	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0008	1431	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0009	1431	1	0	0	0	0	1	copy fasta	NR1H4	chr12	100468866	100569414
NR1H4_chr12_100468866_100569414	0/0	c0010	1431	1	0	0	1	0	0	copy fasta	NR1H4	chr12	100468866	100569414
NR1I2_chr3_119777101_119823487	1/1	c0001	1305	376	63	64	191	18	38	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0002	1305	18	17	1	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0003	1305	13	13	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0004	1305	2	0	2	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0005	1305	2	0	1	0	0	1	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0006	1305	1	1	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0007	1305	1	0	0	0	0	1	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0008	1305	1	0	0	1	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0009	1305	1	1	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I2_chr3_119777101_119823487	0/0	c0010	1305	1	1	0	0	0	0	copy fasta	NR1I2	chr3	119777101	119823487
NR1I3_chr1_161224669_161243203	1/1	c0001	1047	249	73	47	89	11	27	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0002	1047	179	11	31	109	5	23	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0003	1047	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0004	1047	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0005	1047	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0006	1047	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0007	1047	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0009	1047	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR1I3_chr1_161224669_161243203	0/0	c0010	1047	1	1	0	0	0	0	copy fasta	NR1I3	chr1	161224669	161243203
NR2C1_chr12_95015229_95078618	1/1	c0001	1812	423	90	76	194	18	43	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	c0002	1812	4	0	0	4	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	c0003	1812	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	c0004	1812	1	0	0	0	0	1	copy fasta	NR2C1	chr12	95015229	95078618
NR2C1_chr12_95015229_95078618	0/0	c0005	1812	1	1	0	0	0	0	copy fasta	NR2C1	chr12	95015229	95078618
NR2C2AP_chr19_19196409_19208414	1/1	c0001	420	425	98	70	193	16	46	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2AP_chr19_19196409_19208414	0/0	c0002	420	1	0	0	1	0	0	copy fasta	NR2C2AP	chr19	19196409	19208414
NR2C2_chr3_14942583_15054273	1/1	c0001	1791	262	51	59	106	7	37	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0002	1791	16	13	3	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0003	1791	14	7	3	0	3	1	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0004	1791	8	8	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0005	1791	3	3	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0006	1791	2	0	0	2	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0007	1791	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273