JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NR2C2_chr3_14942583_15054273	0/0	c0008	1791	1	0	1	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2C2_chr3_14942583_15054273	0/0	c0009	1791	1	1	0	0	0	0	copy fasta	NR2C2	chr3	14942583	15054273
NR2E1_chr6_108161022_108193805	1/1	c0001	1158	391	98	66	170	16	39	copy fasta	NR2E1	chr6	108161022	108193805
NR2E1_chr6_108161022_108193805	0/0	c0002	1158	1	0	0	0	0	1	copy fasta	NR2E1	chr6	108161022	108193805
NR2E3_chr15_71805554_71823253	1/1	c0001	1233	333	81	78	130	13	29	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0002	1233	51	0	0	50	1	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0003	1233	7	7	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0004	1233	6	0	0	6	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0005	1233	4	0	0	4	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0006	1233	3	3	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0007	1233	3	3	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0008	1233	2	1	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0009	1233	2	0	1	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0010	1233	1	0	0	0	0	1	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0011	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0012	1233	1	0	0	0	0	1	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0013	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0014	1233	1	0	1	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0015	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0016	1233	1	0	0	0	0	1	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0017	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0018	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0019	1233	1	1	0	0	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0020	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0021	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2E3_chr15_71805554_71823253	0/0	c0022	1233	1	0	0	1	0	0	copy fasta	NR2E3	chr15	71805554	71823253
NR2F1_chr5_93578222_93599611	1/1	c0001	1272	290	88	58	92	14	36	copy fasta	NR2F1	chr5	93578222	93599611
NR2F1_chr5_93578222_93599611	0/0	c0002	1272	4	4	0	0	0	0	copy fasta	NR2F1	chr5	93578222	93599611
NR2F2_chr15_96325700_96345258	1/1	c0001	1245	444	100	82	200	16	44	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	c0002	1245	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	c0003	1245	1	0	0	0	0	1	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	c0004	1245	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F2_chr15_96325700_96345258	0/0	c0005	1245	1	0	0	1	0	0	copy fasta	NR2F2	chr15	96325700	96345258
NR2F6_chr19_17226883_17250919	1/1	c0001	1215	294	59	61	121	13	38	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0002	1215	103	26	20	47	3	7	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0003	1215	5	5	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0004	1215	5	5	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0005	1215	2	0	1	0	0	1	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0006	1215	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0007	1215	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0008	1215	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0009	1215	1	1	0	0	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR2F6_chr19_17226883_17250919	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	NR2F6	chr19	17226883	17250919
NR3C1_chr5_143272934_143408686	1/1	c0001	2334	207	60	38	71	13	23	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0002	2334	16	0	0	16	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0003	2334	13	13	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0004	2334	12	4	6	0	2	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0005	2334	7	0	0	7	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0006	2334	6	6	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0007	2334	3	3	0	0	0	0	copy fasta	NR3C1	chr5	143272934	143408686