JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOD_chr3_195563705_195588940	0/0	c0007	570	1	0	0	0	0	1	copy fasta	APOD	chr3	195563705	195588940
APOE_chr19_44900796_44914393	1/1	c0001	954	326	55	70	144	13	42	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0002	954	53	26	9	14	1	3	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0003	954	35	14	6	14	0	1	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0004	954	3	3	0	0	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0005	954	2	0	0	2	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0006	954	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0007	954	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0008	954	1	0	1	0	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0009	954	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOE_chr19_44900796_44914393	0/0	c0010	954	1	0	0	1	0	0	copy fasta	APOE	chr19	44900796	44914393
APOF_chr12_56355568_56367857	1/1	c0001	981	199	27	48	89	10	23	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0002	981	24	22	2	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0003	981	22	21	1	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0004	981	13	12	1	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0005	981	8	0	0	8	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0006	981	3	3	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0007	981	2	2	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0008	981	2	0	0	2	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0009	981	1	0	0	0	0	1	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0010	981	1	1	0	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0011	981	1	0	1	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0012	981	1	0	1	0	0	0	copy fasta	APOF	chr12	56355568	56367857
APOF_chr12_56355568_56367857	0/0	c0013	981	1	0	0	1	0	0	copy fasta	APOF	chr12	56355568	56367857
APOH_chr17_66207033_66234415	0/0	c0001	1038	181	43	28	89	1	20	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	1/1	c0002	1038	131	34	34	32	11	18	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0003	1038	18	0	3	13	2	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0004	1038	12	9	0	1	1	1	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0005	1038	9	4	0	3	0	2	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0006	1038	7	0	5	0	0	2	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0007	1038	7	0	6	1	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0008	1038	6	0	0	6	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0009	1038	3	0	0	3	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0010	1038	2	0	0	2	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0011	1038	2	1	1	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0012	1038	1	1	0	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0013	1038	1	1	0	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0014	1038	1	0	0	0	0	1	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0015	1038	1	1	0	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0016	1038	1	0	0	1	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0017	1035	1	0	1	0	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0018	1038	1	0	0	1	0	0	copy fasta	APOH	chr17	66207033	66234415
APOH_chr17_66207033_66234415	0/0	c0019	1038	1	0	0	0	1	0	copy fasta	APOH	chr17	66207033	66234415
APOL1_chr22_36248133_36272525	0/1	c0001	1197	272	19	65	137	12	38	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	1/0	c0002	1197	65	2	7	46	3	6	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0003	1197	23	23	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0004	1197	13	12	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0005	1191	11	11	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0006	1197	10	9	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0007	1197	5	3	1	0	1	0	copy fasta	APOL1	chr22	36248133	36272525