JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NR3C1_chr5_143272934_143408686	0/0	c0008	2334	1	0	0	0	1	0	copy fasta	NR3C1	chr5	143272934	143408686
NR3C1_chr5_143272934_143408686	0/0	c0009	2334	1	0	0	0	0	1	copy fasta	NR3C1	chr5	143272934	143408686
NR3C2_chr4_148073764_148447414	0/1	c0001	2955	117	41	28	34	4	9	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	1/0	c0002	2955	26	7	5	11	0	2	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0003	2955	13	13	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0004	2955	5	1	0	4	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0005	2955	2	2	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0006	2955	2	2	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0007	2955	1	0	1	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0008	2955	1	0	0	1	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0009	2955	1	0	0	0	0	1	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0010	2955	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR3C2_chr4_148073764_148447414	0/0	c0011	2955	1	1	0	0	0	0	copy fasta	NR3C2	chr4	148073764	148447414
NR4A1_chr12_52046442_52064503	1/1	c0001	1797	307	30	60	160	16	39	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0002	1797	46	12	4	27	0	3	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0003	1797	24	24	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0004	1797	22	20	2	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0005	1797	6	6	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0006	1797	3	0	1	0	2	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0007	1797	2	0	2	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0008	1797	2	0	2	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0009	1797	2	2	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0010	1797	1	0	0	0	0	1	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0011	1797	1	0	1	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0012	1797	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0013	1797	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0014	1763	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0015	1797	1	1	0	0	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0016	1797	1	0	0	0	0	1	copy fasta	NR4A1	chr12	52046442	52064503
NR4A1_chr12_52046442_52064503	0/0	c0017	1797	1	0	0	1	0	0	copy fasta	NR4A1	chr12	52046442	52064503
NR4A2_chr2_156319437_156337721	1/0	c0001	1797	381	76	65	188	9	42	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	c0002	1797	3	0	3	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/1	c0003	1797	1	0	0	0	0	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A2_chr2_156319437_156337721	0/0	c0004	1797	1	0	0	0	1	0	copy fasta	NR4A2	chr2	156319437	156337721
NR4A3_chr9_99816885_99871891	1/1	c0001	1881	153	38	23	71	4	15	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0002	1881	85	28	17	31	1	8	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0003	1881	21	0	4	12	2	3	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0004	1881	5	2	2	0	0	1	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0005	1881	5	3	2	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0006	1881	5	1	2	0	1	1	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0007	1881	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0008	1881	1	0	1	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0009	1881	1	1	0	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR4A3_chr9_99816885_99871891	0/0	c0010	1881	1	0	1	0	0	0	copy fasta	NR4A3	chr9	99816885	99871891
NR5A1_chr9_124476236_124512399	1/1	c0001	1386	219	13	54	101	10	39	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0002	1386	95	45	2	42	0	6	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0003	1386	26	24	2	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0004	1386	3	3	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0005	1386	2	2	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0006	1386	2	2	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399