JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NR5A1_chr9_124476236_124512399	0/0	c0007	1386	2	2	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0012	1386	1	0	0	1	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0013	1386	1	1	0	0	0	0	copy fasta	NR5A1	chr9	124476236	124512399
NR5A1_chr9_124476236_124512399	0/0	c0014	1386	1	0	0	0	0	1	copy fasta	NR5A1	chr9	124476236	124512399
NR5A2_chr1_200022710_200182415	1/0	c0001	1626	130	22	33	41	6	27	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/1	c0002	1626	73	11	11	38	3	9	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0003	1626	35	20	10	1	1	3	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0004	1626	24	17	2	4	0	1	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0005	1626	9	8	1	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0006	1626	3	3	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0007	1626	3	3	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0008	1626	3	3	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0009	1626	2	2	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0010	1626	1	1	0	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0011	1626	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0012	1626	1	0	0	1	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR5A2_chr1_200022710_200182415	0/0	c0013	1626	1	0	1	0	0	0	copy fasta	NR5A2	chr1	200022710	200182415
NR6A1_chr9_124512275_124776311	1/1	c0001	1443	219	69	20	95	6	27	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	c0002	1443	10	10	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	c0003	1443	2	0	0	2	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	c0004	1443	1	1	0	0	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	c0005	1443	1	0	0	1	0	0	copy fasta	NR6A1	chr9	124512275	124776311
NR6A1_chr9_124512275_124776311	0/0	c0006	1443	1	0	0	0	0	1	copy fasta	NR6A1	chr9	124512275	124776311
NRAP_chr10_113583714_113669041	0/0	c0001	5193	53	3	11	32	4	3	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0002	5193	26	3	1	18	0	4	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0003	5193	20	8	0	7	0	5	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0004	5193	19	0	4	12	1	2	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0005	5193	14	3	1	6	0	4	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0006	5193	13	1	8	4	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0007	5193	13	0	3	7	2	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0008	5193	12	1	9	1	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	1/0	c0009	5193	12	5	5	1	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0010	5193	11	4	3	3	1	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0011	5193	10	0	3	5	0	2	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0012	5193	8	0	0	8	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0013	5193	7	2	2	3	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0014	5193	7	0	5	0	1	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0015	5193	6	3	0	3	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0016	5193	6	4	0	1	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0017	5193	6	1	4	0	0	1	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0018	5193	6	3	0	0	0	3	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0019	5193	6	0	0	6	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0020	5193	5	1	2	0	0	2	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0021	5193	5	0	1	4	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0022	5193	4	0	0	4	0	0	copy fasta	NRAP	chr10	113583714	113669041
NRAP_chr10_113583714_113669041	0/0	c0023	5193	4	0	0	3	1	0	copy fasta	NRAP	chr10	113583714	113669041