JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRBF2_chr10_63128328_63160024	0/0	c0003	864	8	8	0	0	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	c0004	864	2	2	0	0	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBF2_chr10_63128328_63160024	0/0	c0005	864	1	0	0	1	0	0	copy fasta	NRBF2	chr10	63128328	63160024
NRBP1_chr2_27423631_27447259	1/1	c0001	1608	265	81	55	80	11	36	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	c0002	1608	6	3	3	0	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	c0003	1608	2	0	0	2	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	c0004	1608	1	0	0	1	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	c0005	1608	1	0	0	1	0	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP1_chr2_27423631_27447259	0/0	c0006	1618	1	0	0	0	1	0	copy fasta	NRBP1	chr2	27423631	27447259
NRBP2_chr8_143828583_143845973	1/0	c0001	1506	370	81	65	173	12	38	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/1	c0002	1506	11	0	4	3	0	3	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0003	1506	10	8	1	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0004	1506	3	3	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0005	1506	2	1	0	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0006	1506	1	0	0	0	0	1	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0008	1506	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRBP2_chr8_143828583_143845973	0/0	c0009	1506	1	0	0	1	0	0	copy fasta	NRBP2	chr8	143828583	143845973
NRCAM_chr7_108142649_108461436	0/0	c0001	3915	40	13	9	10	1	7	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0002	3915	26	2	7	14	1	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0003	3915	22	8	2	9	1	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/1	c0004	3915	20	2	6	4	1	6	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0005	3915	20	2	5	8	0	5	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	1/0	c0006	3915	19	8	7	0	0	3	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0007	3915	14	14	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0008	3915	12	11	1	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0009	3915	9	0	5	0	1	3	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0010	3915	4	0	0	1	1	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0011	3915	2	2	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0012	3915	2	1	1	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0013	3915	2	2	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0014	3915	2	0	0	0	0	2	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0015	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0016	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0017	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0018	3915	1	0	0	0	0	1	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0019	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0020	3915	1	0	1	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0021	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0022	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0023	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0024	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0025	3915	1	1	0	0	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0026	3915	1	0	0	1	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0027	3915	1	0	0	0	0	1	copy fasta	NRCAM	chr7	108142649	108461436
NRCAM_chr7_108142649_108461436	0/0	c0028	3915	1	0	0	1	0	0	copy fasta	NRCAM	chr7	108142649	108461436
NRDC_chr1_51784210_51883727	0/0	c0001	3453	68	12	14	27	1	14	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0002	3456	67	50	8	2	3	4	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	1/1	c0003	3456	41	12	9	9	2	7	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0004	3453	15	2	2	10	0	1	copy fasta	NRDC	chr1	51784210	51883727