JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRDC_chr1_51784210_51883727	0/0	c0005	3456	12	3	0	4	0	5	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0006	3456	8	2	1	3	0	2	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0007	3453	7	1	2	4	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0008	3456	3	2	0	0	0	1	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0009	3453	3	3	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0010	3453	3	0	3	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0011	3456	3	3	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0012	3456	3	3	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0013	3453	2	0	0	2	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0014	3453	2	0	2	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0015	3453	2	0	2	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0016	3456	1	1	0	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0017	3456	1	0	0	0	0	1	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0018	3456	1	0	1	0	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0019	3453	1	0	0	0	0	1	copy fasta	NRDC	chr1	51784210	51883727
NRDC_chr1_51784210_51883727	0/0	c0020	3453	1	0	0	1	0	0	copy fasta	NRDC	chr1	51784210	51883727
NRDE2_chr14_90262860_90336941	1/0	c0001	3495	107	49	22	25	4	6	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/1	c0002	3495	94	4	21	55	4	9	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0003	3495	72	21	11	31	0	9	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0004	3495	39	3	11	14	2	9	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0005	3495	9	9	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0006	3495	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0007	3495	2	0	2	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0008	3495	2	2	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0009	3495	2	0	1	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0010	3495	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0011	3495	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0012	3495	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0013	3495	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0014	3495	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0015	3495	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0016	3495	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0017	3495	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0018	3495	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0019	3495	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0020	3495	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0021	3495	1	0	0	0	0	1	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0022	3477	1	0	0	1	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0023	3495	1	0	1	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NRDE2_chr14_90262860_90336941	0/0	c0024	3495	1	1	0	0	0	0	copy fasta	NRDE2	chr14	90262860	90336941
NREP_chr5_111724303_111762194	1/0	c0001	207	370	90	64	159	12	44	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	c0002	207	62	6	6	50	0	0	copy fasta	NREP	chr5	111724303	111762194
NREP_chr5_111724303_111762194	0/0	c0003	207	1	0	0	1	0	0	copy fasta	NREP	chr5	111724303	111762194
NRF1_chr7_129606720_129762076	0/1	c0001	1512	201	58	30	94	1	17	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	1/0	c0002	1512	159	22	39	64	11	22	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	c0003	1512	23	0	3	18	1	1	copy fasta	NRF1	chr7	129606720	129762076
NRF1_chr7_129606720_129762076	0/0	c0004	1512	1	0	0	0	1	0	copy fasta	NRF1	chr7	129606720	129762076
NRG1_chr8_32543311_32779046	1/1	c0001	1923	98	45	21	14	5	11	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0002	1923	67	4	12	30	5	16	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0003	1923	27	0	3	20	0	4	copy fasta	NRG1	chr8	32543311	32779046