JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRG1_chr8_32543311_32779046	0/0	c0004	1923	10	1	5	0	2	2	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0005	1923	8	8	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0006	1923	8	1	1	6	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0007	1923	7	7	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0008	1923	5	5	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0009	1923	4	0	2	0	2	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0010	1923	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0011	1923	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0012	1923	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0013	1923	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0014	1923	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0015	1923	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0016	1923	1	1	0	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0017	1923	1	0	0	0	0	1	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0018	1923	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG1_chr8_32543311_32779046	0/0	c0019	1923	1	0	1	0	0	0	copy fasta	NRG1	chr8	32543311	32779046
NRG2_chr5_139841781_140048299	1/1	c0001	2553	133	32	34	46	5	14	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0002	2547	29	16	7	4	0	2	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0003	2553	5	0	1	0	0	4	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0004	2553	5	2	1	0	2	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0005	2553	3	3	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0006	2553	2	2	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0007	2547	2	1	0	0	1	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0008	2553	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0009	2553	1	0	1	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0010	2553	1	0	0	0	0	1	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0011	2553	1	1	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0012	2553	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0013	2547	1	1	0	0	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0014	2553	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0015	2547	1	0	0	1	0	0	copy fasta	NRG2	chr5	139841781	140048299
NRG2_chr5_139841781_140048299	0/0	c0016	2553	1	0	0	0	0	1	copy fasta	NRG2	chr5	139841781	140048299
NRG3_chr10_81870194_82992178	0/0	c0001	2091	32	15	6	5	2	4	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	c0002	2091	19	12	3	3	0	1	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	c0003	2091	9	6	2	0	0	1	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	c0004	2085	3	2	1	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	c0005	2091	1	1	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	c0006	2091	1	1	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG3_chr10_81870194_82992178	0/0	c0007	2091	1	1	0	0	0	0	copy fasta	NRG3	chr10	81870194	82992178
NRG4_chr15_75935936_76017424	1/1	c0001	348	362	77	60	173	14	36	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	c0002	348	5	5	0	0	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRG4_chr15_75935936_76017424	0/0	c0003	348	1	0	0	1	0	0	copy fasta	NRG4	chr15	75935936	76017424
NRGN_chr11_124734942_124752210	1/1	c0001	237	393	91	68	174	12	46	copy fasta	NRGN	chr11	124734942	124752210
NRGN_chr11_124734942_124752210	0/0	c0002	237	1	1	0	0	0	0	copy fasta	NRGN	chr11	124734942	124752210
NRIP1_chr21_14956235_15070000	0/0	c0001	3477	192	45	35	93	6	13	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	1/1	c0002	3477	118	20	30	45	8	13	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0003	3477	47	0	0	41	0	6	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0004	3477	9	9	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0005	3477	5	5	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0006	3477	4	4	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000