JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRIP1_chr21_14956235_15070000	0/0	c0007	3477	3	3	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0008	3477	3	0	2	0	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0009	3477	3	1	0	0	0	2	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0010	3477	2	0	2	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0011	3477	2	0	0	2	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0012	3477	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0013	3477	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0014	3477	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0015	3477	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0016	3477	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0017	3477	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0018	3477	1	0	1	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0019	3477	1	0	0	0	0	1	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0020	3477	1	0	0	1	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP1_chr21_14956235_15070000	0/0	c0021	3477	1	1	0	0	0	0	copy fasta	NRIP1	chr21	14956235	15070000
NRIP2_chr12_2820348_2840035	1/1	c0001	846	312	68	63	135	10	34	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0002	846	53	9	3	35	0	6	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0003	846	35	0	6	29	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0004	846	16	15	1	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0005	846	2	2	0	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0006	846	2	0	2	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0007	846	1	0	1	0	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP2_chr12_2820348_2840035	0/0	c0008	846	1	0	0	1	0	0	copy fasta	NRIP2	chr12	2820348	2840035
NRIP3_chr11_8975576_9009001	1/1	c0001	726	378	89	61	170	12	44	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	c0002	726	14	0	0	14	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	c0003	726	6	0	0	6	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	c0004	726	4	4	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	c0005	726	2	0	0	2	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	c0006	726	1	1	0	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRIP3_chr11_8975576_9009001	0/0	c0007	726	1	0	1	0	0	0	copy fasta	NRIP3	chr11	8975576	9009001
NRK_chrX_105817539_105963610	1/1	c0001	4749	122	15	23	61	4	17	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0002	4749	50	15	12	14	0	9	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0003	4749	28	27	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0004	4749	7	7	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0005	4749	2	2	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0006	4623	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0007	4749	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0008	4749	1	0	0	0	1	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0009	4749	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0010	4749	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0011	4749	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0012	4749	1	0	0	1	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0013	4750	1	0	0	1	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0014	4749	1	0	1	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRK_chrX_105817539_105963610	0/0	c0015	4749	1	1	0	0	0	0	copy fasta	NRK	chrX	105817539	105963610
NRL_chr14_24073662_24119949	1/1	c0001	714	374	92	66	162	12	40	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	c0002	714	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRL_chr14_24073662_24119949	0/0	c0003	714	1	1	0	0	0	0	copy fasta	NRL	chr14	24073662	24119949
NRM_chr6_30683049_30695984	0/1	c0001	789	422	84	77	196	17	47	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	c0002	789	15	1	3	10	0	1	copy fasta	NRM	chr6	30683049	30695984