JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRM_chr6_30683049_30695984	0/0	c0003	789	5	0	4	0	1	0	copy fasta	NRM	chr6	30683049	30695984
NRM_chr6_30683049_30695984	0/0	c0004	789	1	1	0	0	0	0	copy fasta	NRM	chr6	30683049	30695984
NRN1L_chr16_67879885_67891368	1/1	c0001	498	205	39	47	74	11	32	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0002	498	55	24	14	10	1	6	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0003	498	20	17	1	0	0	2	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0004	498	6	6	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0005	498	4	4	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0006	498	2	2	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0007	498	2	0	0	2	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0008	498	1	1	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0009	498	1	0	0	1	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0010	498	1	0	0	1	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1L_chr16_67879885_67891368	0/0	c0011	498	1	1	0	0	0	0	copy fasta	NRN1L	chr16	67879885	67891368
NRN1_chr6_5992999_6011925	1/1	c0001	429	459	94	80	220	17	46	copy fasta	NRN1	chr6	5992999	6011925
NRN1_chr6_5992999_6011925	0/0	c0002	429	2	0	2	0	0	0	copy fasta	NRN1	chr6	5992999	6011925
NRN1_chr6_5992999_6011925	0/0	c0003	429	1	0	0	0	1	0	copy fasta	NRN1	chr6	5992999	6011925
NRP1_chr10_33172493_33339667	0/1	c0001	2772	51	8	15	15	2	10	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0002	2772	45	24	9	8	0	4	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0003	2772	25	4	4	13	1	3	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0004	2772	20	1	7	8	1	3	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0005	2772	19	0	1	15	1	2	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0006	2772	15	10	1	4	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0007	2772	7	2	2	2	1	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0008	2772	6	0	0	4	0	2	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0009	2772	5	3	1	0	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0010	2772	5	0	1	4	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0011	2772	4	0	0	4	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0012	2772	4	4	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0013	2772	4	4	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0014	2772	4	1	0	2	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0015	2772	4	0	0	4	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0016	2772	4	1	0	2	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0017	2772	4	0	3	0	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0018	2772	3	3	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0019	2772	3	0	1	0	1	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0020	2772	3	0	0	3	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0021	2772	2	0	1	0	1	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0022	2772	2	1	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0023	2772	2	2	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0024	2772	2	1	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0025	2772	2	0	0	1	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0026	2772	2	0	0	1	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0027	2772	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0028	2772	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0029	2772	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0030	2772	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0031	2772	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0032	2772	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0033	2772	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0034	2772	1	1	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667