JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRP1_chr10_33172493_33339667	0/0	c0035	2772	1	0	0	0	0	1	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0036	2772	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0037	2772	1	0	0	1	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0038	2772	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0039	2772	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	1/0	c0040	2772	1	0	0	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP1_chr10_33172493_33339667	0/0	c0041	2772	1	0	1	0	0	0	copy fasta	NRP1	chr10	33172493	33339667
NRP2_chr2_205677501_205803131	0/0	c0001	2781	100	2	28	48	8	14	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/1	c0002	2781	76	38	18	10	2	7	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0003	2781	59	10	7	35	1	6	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0004	2781	55	2	12	36	1	4	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0005	2781	9	3	3	0	2	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0006	2781	8	8	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	1/0	c0007	2781	5	4	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0008	2781	4	4	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0009	2781	4	1	3	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0010	2781	4	0	0	0	2	2	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0011	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0012	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0013	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0014	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0015	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0016	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0017	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0018	2781	2	2	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0019	2781	1	0	0	1	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0020	2781	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0021	2781	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0022	2781	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0023	2781	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0024	2781	1	0	0	0	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0025	2781	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0026	2781	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0027	2781	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0028	2781	1	1	0	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0029	2781	1	0	1	0	0	0	copy fasta	NRP2	chr2	205677501	205803131
NRP2_chr2_205677501_205803131	0/0	c0030	2781	1	0	0	0	0	1	copy fasta	NRP2	chr2	205677501	205803131
NRROS_chr3_196634694_196667004	0/0	c0001	2079	368	65	60	193	10	40	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	1/0	c0002	2079	56	22	12	11	6	4	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/1	c0003	2079	14	0	10	0	2	1	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0004	2079	11	0	0	11	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0005	2079	4	4	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0006	2079	3	2	1	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0007	2079	3	3	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0008	2079	2	2	0	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0009	2079	2	0	1	0	0	1	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0010	2079	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0011	2079	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0012	2079	1	0	1	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0013	2079	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004