JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOL1_chr22_36248133_36272525	0/0	c0008	1197	4	4	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0009	1197	3	0	0	3	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0010	1197	3	2	0	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0011	1197	2	1	1	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0012	1197	1	0	0	0	0	1	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0013	1197	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL1_chr22_36248133_36272525	0/0	c0014	1197	1	1	0	0	0	0	copy fasta	APOL1	chr22	36248133	36272525
APOL2_chr22_36221209_36244527	1/1	c0001	1014	322	51	75	138	17	39	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	c0002	1014	59	34	7	9	1	8	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	c0003	1014	1	0	0	0	0	1	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	c0004	1014	1	0	0	1	0	0	copy fasta	APOL2	chr22	36221209	36244527
APOL2_chr22_36221209_36244527	0/0	c0005	1014	1	1	0	0	0	0	copy fasta	APOL2	chr22	36221209	36244527
APOL3_chr22_36135329_36165755	0/1	c0001	996	138	6	28	76	8	19	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0002	996	89	0	12	67	1	9	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	1/0	c0003	996	81	60	14	2	0	4	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0004	996	23	9	6	2	2	4	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0005	996	10	9	0	0	1	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0006	996	8	1	5	0	2	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0007	996	8	7	1	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0008	996	3	0	0	0	0	3	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0009	996	2	2	0	0	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0010	996	1	0	0	0	0	1	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0011	996	1	0	0	0	0	1	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0012	996	1	0	0	1	0	0	copy fasta	APOL3	chr22	36135329	36165755
APOL3_chr22_36135329_36165755	0/0	c0013	996	1	0	0	0	0	1	copy fasta	APOL3	chr22	36135329	36165755
APOL4_chr22_36184128_36206809	0/1	c0001	1047	252	47	39	131	10	24	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0002	1045	59	6	10	27	4	12	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0003	1045	41	6	27	4	1	3	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0004	1047	20	17	2	0	1	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0005	1045	20	3	0	14	0	3	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0006	1047	9	8	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0007	1047	6	0	0	6	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0008	1047	6	6	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0009	1045	5	0	0	5	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0010	1045	4	0	0	4	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0011	1047	2	2	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0012	1047	2	0	0	0	0	2	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0013	1047	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0014	1047	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0015	1047	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0016	1047	1	0	0	1	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0017	1047	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0018	1047	1	0	1	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	1/0	c0019	1047	1	0	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL4_chr22_36184128_36206809	0/0	c0020	1047	1	1	0	0	0	0	copy fasta	APOL4	chr22	36184128	36206809
APOL5_chr22_35712872_35734483	0/1	c0001	1302	147	36	24	62	10	14	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0002	1302	134	12	20	84	4	14	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0003	1302	49	6	18	13	3	9	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0004	1302	20	2	3	9	0	6	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0005	1302	14	10	0	0	0	4	copy fasta	APOL5	chr22	35712872	35734483