JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRROS_chr3_196634694_196667004	0/0	c0014	2079	1	0	1	0	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0015	2079	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0016	2079	1	0	0	1	0	0	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0017	2079	1	0	0	0	0	1	copy fasta	NRROS	chr3	196634694	196667004
NRROS_chr3_196634694_196667004	0/0	c0018	2079	1	0	0	0	0	1	copy fasta	NRROS	chr3	196634694	196667004
NRSN1_chr6_24121215_24152530	1/1	c0001	588	398	96	73	172	16	39	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	c0002	588	4	0	2	0	0	2	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	c0003	588	3	2	1	0	0	0	copy fasta	NRSN1	chr6	24121215	24152530
NRSN1_chr6_24121215_24152530	0/0	c0004	588	1	0	0	0	0	1	copy fasta	NRSN1	chr6	24121215	24152530
NRSN2_chr20_342111_359862	1/1	c0001	615	359	59	70	166	18	44	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0002	615	32	20	6	4	0	2	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0003	615	5	5	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0004	615	5	5	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0005	615	4	4	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0006	615	2	2	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0007	615	1	0	1	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0008	615	1	0	1	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0009	615	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0010	615	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0011	615	1	0	0	0	0	1	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0012	615	1	0	0	0	0	1	copy fasta	NRSN2	chr20	342111	359862
NRSN2_chr20_342111_359862	0/0	c0013	615	1	1	0	0	0	0	copy fasta	NRSN2	chr20	342111	359862
NRTN_chr19_5800067_5833324	1/1	c0001	594	328	50	78	145	14	39	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0002	594	34	7	5	13	0	9	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0003	594	17	17	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0004	594	10	10	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0005	594	10	9	1	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0006	594	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0007	594	1	1	0	0	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRTN_chr19_5800067_5833324	0/0	c0008	594	1	0	0	1	0	0	copy fasta	NRTN	chr19	5800067	5833324
NRXN1_chr2_49913503_51037132	0/0	c0001	4524	68	22	20	17	3	6	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0002	4524	31	23	2	3	1	2	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0003	4524	4	4	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0004	4524	3	1	0	2	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0005	4524	2	1	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0006	4524	1	0	0	1	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0007	4524	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0008	4524	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0009	4524	1	0	1	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0010	4524	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0011	4524	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0012	4524	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN1_chr2_49913503_51037132	0/0	c0013	4524	1	1	0	0	0	0	copy fasta	NRXN1	chr2	49913503	51037132
NRXN2_chr11_64601174_64728197	1/0	c0001	5139	87	36	13	29	3	5	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/1	c0002	5139	69	5	19	27	6	11	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0003	5139	57	17	6	29	0	5	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0004	5139	47	3	8	27	3	6	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0005	5139	10	8	1	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0006	5139	8	6	2	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0007	5139	8	0	1	7	0	0	copy fasta	NRXN2	chr11	64601174	64728197