JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NRXN2_chr11_64601174_64728197	0/0	c0008	5139	2	1	1	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0009	5139	2	0	0	2	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0010	5139	1	0	0	0	0	1	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0011	5139	1	1	0	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0012	5139	1	0	0	0	0	1	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0013	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0014	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0015	5139	1	1	0	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0016	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0017	5139	1	1	0	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0018	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0019	5139	1	1	0	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0020	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0021	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0022	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0023	5139	1	0	0	0	0	1	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0024	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0025	5139	1	0	1	0	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0026	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN2_chr11_64601174_64728197	0/0	c0027	5139	1	0	0	1	0	0	copy fasta	NRXN2	chr11	64601174	64728197
NRXN3_chr14_78165373_79873291	0/0	c0001	4716	6	5	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0002	4716	3	3	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0003	4716	3	3	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0004	4716	3	2	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0005	4716	2	0	2	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0006	4716	2	1	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0007	4716	2	2	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0008	4716	1	0	1	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0009	4716	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NRXN3_chr14_78165373_79873291	0/0	c0010	4716	1	1	0	0	0	0	copy fasta	NRXN3	chr14	78165373	79873291
NSA2_chr5_74762249_74785113	1/0	c0001	783	249	24	46	139	8	31	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/1	c0002	783	139	58	31	36	4	9	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0003	783	5	4	1	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0004	783	3	0	0	0	0	3	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0005	783	2	2	0	0	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0006	783	1	0	0	0	0	1	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0007	783	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0008	783	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSA2_chr5_74762249_74785113	0/0	c0009	783	1	0	0	1	0	0	copy fasta	NSA2	chr5	74762249	74785113
NSD1_chr5_177128773_177305213	0/1	c0001	8091	109	19	24	49	4	12	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0002	8091	76	5	13	49	2	7	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0003	8091	26	24	2	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0004	8091	17	1	10	0	2	4	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0005	8091	15	13	0	0	2	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0006	8091	9	3	1	1	0	4	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0007	8091	4	4	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0008	8091	4	4	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0009	8091	4	0	0	2	0	2	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0010	8091	3	3	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0011	8091	2	0	0	0	0	2	copy fasta	NSD1	chr5	177128773	177305213