JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NSD1_chr5_177128773_177305213	0/0	c0012	8091	2	1	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0013	8091	2	2	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0014	8091	2	2	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0015	8091	2	2	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0016	8091	2	0	0	2	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0017	8091	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0018	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0019	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0020	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	1/0	c0021	8091	1	0	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0022	8091	1	0	0	0	0	1	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0023	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0024	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0025	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0026	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0027	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0028	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0029	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0030	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0031	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0032	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0033	8091	1	1	0	0	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0034	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD1_chr5_177128773_177305213	0/0	c0035	8091	1	0	0	1	0	0	copy fasta	NSD1	chr5	177128773	177305213
NSD2_chr4_1866393_1987192	1/1	c0001	4098	115	49	30	20	7	7	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0002	4098	7	7	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0003	4098	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0004	4098	1	0	0	0	0	1	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0005	4098	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0006	4098	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0007	4098	1	0	0	0	1	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0008	4098	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0009	4098	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD2_chr4_1866393_1987192	0/0	c0010	4098	1	1	0	0	0	0	copy fasta	NSD2	chr4	1866393	1987192
NSD3_chr8_38264704_38387271	1/1	c0001	4314	211	38	41	104	13	13	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0002	4314	2	2	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0003	4314	2	2	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0004	4314	1	0	0	1	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0005	4314	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0006	4314	1	0	1	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0007	4314	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0008	4314	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0009	4314	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0010	4314	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0011	4314	1	0	0	1	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0012	4314	1	0	0	0	1	0	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0013	4314	1	0	0	0	0	1	copy fasta	NSD3	chr8	38264704	38387271
NSD3_chr8_38264704_38387271	0/0	c0014	4314	1	1	0	0	0	0	copy fasta	NSD3	chr8	38264704	38387271
NSDHL_chrX_152826063_152874729	0/1	c0001	1122	282	49	50	140	9	33	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	1/0	c0002	1122	33	23	1	7	0	1	copy fasta	NSDHL	chrX	152826063	152874729