JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NSDHL_chrX_152826063_152874729	0/0	c0003	1122	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	c0004	1122	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	c0005	1122	2	0	0	2	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	c0006	1122	2	2	0	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSDHL_chrX_152826063_152874729	0/0	c0007	1122	1	0	1	0	0	0	copy fasta	NSDHL	chrX	152826063	152874729
NSFL1C_chr20_1437166_1471849	0/0	c0001	1113	188	30	32	106	3	17	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	1/1	c0002	1113	176	58	26	60	7	23	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	c0003	1113	2	0	0	0	0	2	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	c0004	1113	2	1	1	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	c0005	1113	1	0	1	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	c0006	1113	1	0	0	1	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	c0007	1113	1	1	0	0	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSFL1C_chr20_1437166_1471849	0/0	c0008	1113	1	0	0	1	0	0	copy fasta	NSFL1C	chr20	1437166	1471849
NSF_chr17_46585669_46762464	0/1	c0001	2235	5	2	2	0	0	0	copy fasta	NSF	chr17	46585669	46762464
NSG1_chr4_4382102_4424058	1/1	c0001	558	390	96	70	158	18	46	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	c0002	558	2	2	0	0	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	c0003	577	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG1_chr4_4382102_4424058	0/0	c0004	558	1	0	0	1	0	0	copy fasta	NSG1	chr4	4382102	4424058
NSG2_chr5_174040706_174114179	1/1	c0001	516	256	92	55	62	9	36	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	c0002	516	21	0	7	10	1	3	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	c0003	516	16	0	1	14	0	1	copy fasta	NSG2	chr5	174040706	174114179
NSG2_chr5_174040706_174114179	0/0	c0004	516	1	0	1	0	0	0	copy fasta	NSG2	chr5	174040706	174114179
NSL1_chr1_212721153_212796777	1/1	c0001	846	158	33	30	75	6	12	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0002	846	126	24	17	65	6	14	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0003	846	73	28	9	28	0	8	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0004	846	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0005	846	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0006	846	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0007	846	1	0	1	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0008	846	1	0	0	1	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0009	846	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSL1_chr1_212721153_212796777	0/0	c0010	846	1	1	0	0	0	0	copy fasta	NSL1	chr1	212721153	212796777
NSMAF_chr8_58578508_58664853	0/1	c0001	2754	251	53	41	118	12	26	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0002	2754	63	7	2	52	0	2	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	1/0	c0003	2754	28	15	6	2	2	2	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0004	2754	4	4	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0005	2754	4	4	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0006	2754	3	0	0	3	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0007	2754	2	2	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0008	2754	2	0	1	0	0	1	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0009	2754	2	0	2	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0010	2754	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0011	2754	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0012	2754	1	0	0	0	0	1	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0013	2754	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0014	2754	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0015	2754	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0016	2754	1	1	0	0	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0017	2754	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853
NSMAF_chr8_58578508_58664853	0/0	c0018	2754	1	0	0	1	0	0	copy fasta	NSMAF	chr8	58578508	58664853