JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NSMCE1_chr16_27219994_27273772	1/1	c0001	801	97	42	18	14	4	17	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0002	801	97	12	14	60	2	9	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0003	801	92	6	14	55	6	11	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0004	801	40	36	4	0	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0005	801	2	0	0	2	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0006	801	1	0	0	0	0	1	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0007	801	1	0	0	1	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0008	801	1	1	0	0	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0009	801	1	0	0	1	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0010	801	1	0	0	1	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE1_chr16_27219994_27273772	0/0	c0011	801	1	1	0	0	0	0	copy fasta	NSMCE1	chr16	27219994	27273772
NSMCE2_chr8_125086860_125372120	1/1	c0001	744	239	87	50	74	4	22	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	c0002	744	2	2	0	0	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	c0003	744	1	0	0	1	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	c0004	744	1	0	0	1	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE2_chr8_125086860_125372120	0/0	c0005	744	1	1	0	0	0	0	copy fasta	NSMCE2	chr8	125086860	125372120
NSMCE3_chr15_29259989_29274822	0/1	c0001	915	372	57	80	176	18	40	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	c0002	915	20	18	2	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	c0003	915	10	9	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	c0004	915	7	6	1	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	c0005	915	4	4	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE3_chr15_29259989_29274822	0/0	c0006	915	2	2	0	0	0	0	copy fasta	NSMCE3	chr15	29259989	29274822
NSMCE4A_chr10_121952091_121980217	1/1	c0001	1158	416	96	78	183	16	41	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0002	1158	6	0	0	6	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0003	1158	4	1	2	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0004	1158	2	0	0	0	0	2	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0005	1158	2	0	2	0	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0006	1158	1	0	0	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0007	1158	1	0	0	0	0	1	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMCE4A_chr10_121952091_121980217	0/0	c0009	1158	1	1	0	0	0	0	copy fasta	NSMCE4A	chr10	121952091	121980217
NSMF_chr9_137442570_137464334	1/1	c0001	1593	405	90	80	167	18	48	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	c0002	1593	4	0	0	4	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	c0003	1593	3	3	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	c0004	1593	1	1	0	0	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSMF_chr9_137442570_137464334	0/0	c0005	1593	1	0	0	1	0	0	copy fasta	NSMF	chr9	137442570	137464334
NSRP1_chr17_30111816_30191475	0/0	c0001	1677	129	43	30	34	4	18	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	1/1	c0002	1677	125	43	21	33	8	18	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0003	1677	7	0	4	3	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0004	1677	3	0	2	0	1	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0005	1677	3	3	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0006	1677	3	0	2	0	1	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0007	1677	2	0	0	2	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0008	1677	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0009	1677	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0010	1677	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0011	1677	1	0	0	0	0	1	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0012	1677	1	0	0	1	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0013	1677	1	0	0	1	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0014	1677	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475