JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NSRP1_chr17_30111816_30191475	0/0	c0015	1677	1	0	1	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0016	1677	1	0	0	0	0	1	copy fasta	NSRP1	chr17	30111816	30191475
NSRP1_chr17_30111816_30191475	0/0	c0017	1677	1	1	0	0	0	0	copy fasta	NSRP1	chr17	30111816	30191475
NSUN2_chr5_6594239_6638044	1/0	c0001	2304	111	43	20	33	8	6	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0002	2304	101	4	9	74	1	13	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/1	c0003	2304	75	14	20	29	3	8	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0004	2304	73	9	12	39	2	11	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0005	2304	17	0	0	17	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0006	2304	8	5	3	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0007	2304	8	2	4	0	1	1	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0008	2304	8	7	1	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0009	2304	7	7	0	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0010	2304	6	0	5	0	0	1	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0011	2304	4	0	1	0	1	2	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0012	2304	4	0	4	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0013	2304	4	4	0	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0014	2304	3	0	0	0	0	3	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0015	2304	2	1	1	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0016	2304	2	0	2	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0017	2304	1	1	0	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0018	2304	1	1	0	0	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0019	2304	1	0	0	1	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0020	2304	1	0	0	0	0	1	copy fasta	NSUN2	chr5	6594239	6638044
NSUN2_chr5_6594239_6638044	0/0	c0021	2304	1	0	0	1	0	0	copy fasta	NSUN2	chr5	6594239	6638044
NSUN3_chr3_94058061_94136832	1/1	c0001	1023	326	73	66	130	15	40	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	c0002	1023	5	5	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	c0003	1023	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	c0004	1023	1	1	0	0	0	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN3_chr3_94058061_94136832	0/0	c0005	1023	1	0	0	0	1	0	copy fasta	NSUN3	chr3	94058061	94136832
NSUN4_chr1_46335807_46370018	1/1	c0001	1155	145	60	28	44	3	8	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0002	1155	108	9	24	61	8	6	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0003	1155	87	5	7	50	4	21	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0004	1155	28	8	12	2	3	3	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0005	1155	11	11	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0006	1155	3	0	3	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0007	1155	2	2	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0008	1155	1	0	0	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0009	1155	1	0	0	0	0	1	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0010	1155	1	0	0	1	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN4_chr1_46335807_46370018	0/0	c0011	1155	1	1	0	0	0	0	copy fasta	NSUN4	chr1	46335807	46370018
NSUN5_chr7_73297516_73313826	0/1	c0001	1401	282	54	46	147	9	25	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	1/0	c0002	1401	101	19	28	35	5	13	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0003	1401	8	0	0	8	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0004	1401	7	0	4	0	1	2	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0005	1401	5	5	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0006	1401	4	4	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0007	1401	3	2	1	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0008	1401	2	2	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0009	1401	2	0	0	2	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0010	1401	1	0	1	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826