JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NSUN5_chr7_73297516_73313826	0/0	c0011	1401	1	0	0	1	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0012	1401	1	0	0	1	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0013	1401	1	1	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0014	1401	1	1	0	0	0	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN5_chr7_73297516_73313826	0/0	c0015	1401	1	0	0	0	1	0	copy fasta	NSUN5	chr7	73297516	73313826
NSUN6_chr10_18540561_18656587	1/1	c0001	1410	335	83	73	131	14	32	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0002	1410	3	3	0	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0003	1410	2	0	2	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0004	1410	2	0	2	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0005	1410	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0006	1410	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0007	1410	1	0	0	1	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN6_chr10_18540561_18656587	0/0	c0008	1410	1	0	1	0	0	0	copy fasta	NSUN6	chr10	18540561	18656587
NSUN7_chr4_40744955_40816184	0/1	c0001	2157	211	47	45	96	6	16	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0002	2157	99	12	4	67	0	16	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0003	2157	49	13	24	6	2	4	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0004	2157	7	7	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	1/0	c0005	2157	3	0	2	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0006	2157	3	2	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0007	2157	3	1	2	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0008	2157	2	0	0	2	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0009	2157	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0010	2157	1	0	1	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0011	2157	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0012	2159	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0013	2157	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0014	2157	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0015	2157	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0016	2157	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0017	2157	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0018	2157	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0019	2147	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0020	2157	1	1	0	0	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0021	2157	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0022	2157	1	0	0	0	0	1	copy fasta	NSUN7	chr4	40744955	40816184
NSUN7_chr4_40744955_40816184	0/0	c0023	2157	1	0	0	1	0	0	copy fasta	NSUN7	chr4	40744955	40816184
NT5C1A_chr1_39646229_39677107	1/1	c0001	1107	294	80	51	114	13	34	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0002	1107	17	1	1	12	0	3	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0003	1107	5	5	0	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0004	1107	3	0	3	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0005	1107	1	0	0	0	1	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0006	1107	1	0	0	0	0	1	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0007	1107	1	0	1	0	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0008	1107	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0009	1107	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0010	1107	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1A_chr1_39646229_39677107	0/0	c0011	1107	1	0	0	1	0	0	copy fasta	NT5C1A	chr1	39646229	39677107
NT5C1B_chr2_18557871_18594569	1/0	c0001	1653	258	38	47	126	13	33	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0002	1653	56	27	10	13	1	5	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/1	c0003	1653	33	1	10	19	2	0	copy fasta	NT5C1B	chr2	18557871	18594569