JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NT5C1B_chr2_18557871_18594569	0/0	c0004	1653	19	15	4	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0005	1653	9	0	3	6	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0006	1653	4	4	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0007	1653	2	2	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0008	1653	2	0	0	2	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0009	1653	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0010	1653	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0011	1653	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0012	1653	1	0	1	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0013	1653	1	0	1	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0014	1653	1	1	0	0	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0015	1653	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0016	1653	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C1B_chr2_18557871_18594569	0/0	c0017	1653	1	0	0	1	0	0	copy fasta	NT5C1B	chr2	18557871	18594569
NT5C2_chr10_103083038_103198272	1/1	c0001	1686	172	27	33	84	5	21	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	c0002	1686	136	37	18	59	5	17	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	c0003	1686	31	2	11	16	2	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C2_chr10_103083038_103198272	0/0	c0004	1686	1	0	0	1	0	0	copy fasta	NT5C2	chr10	103083038	103198272
NT5C3A_chr7_33009130_33067776	0/1	c0001	996	224	61	46	84	10	22	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	1/0	c0002	996	164	23	23	97	4	16	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	c0003	996	9	9	0	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	c0004	996	1	1	0	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	c0005	996	1	0	1	0	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3A_chr7_33009130_33067776	0/0	c0006	996	1	0	0	1	0	0	copy fasta	NT5C3A	chr7	33009130	33067776
NT5C3B_chr17_41820057_41841232	0/1	c0001	903	258	42	64	115	9	27	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	c0002	903	61	8	12	29	2	10	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	c0003	903	23	22	1	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	1/0	c0004	903	21	12	4	0	1	3	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	c0005	903	2	0	0	2	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	c0006	903	1	1	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	c0007	903	1	0	1	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C3B_chr17_41820057_41841232	0/0	c0008	903	1	1	0	0	0	0	copy fasta	NT5C3B	chr17	41820057	41841232
NT5C_chr17_75125228_75136742	1/0	c0001	606	261	54	46	134	7	19	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/1	c0002	606	147	40	29	48	11	18	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	c0003	606	6	0	6	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	c0004	606	1	1	0	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	c0005	606	1	0	1	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	c0006	606	1	1	0	0	0	0	copy fasta	NT5C	chr17	75125228	75136742
NT5C_chr17_75125228_75136742	0/0	c0007	606	1	0	0	0	0	1	copy fasta	NT5C	chr17	75125228	75136742
NT5DC1_chr6_116095853_116254497	1/1	c0001	1368	296	91	55	104	12	32	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	c0002	1368	2	0	2	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	c0003	1368	1	1	0	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC1_chr6_116095853_116254497	0/0	c0004	1368	1	0	1	0	0	0	copy fasta	NT5DC1	chr6	116095853	116254497
NT5DC2_chr3_52519387_52538857	0/1	c0001	1674	181	45	45	78	5	7	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	1/0	c0002	1674	161	28	29	70	10	23	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0003	1674	29	21	5	0	1	2	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0004	1674	3	0	0	0	0	3	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0005	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0006	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0007	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857