JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NT5DC2_chr3_52519387_52538857	0/0	c0008	1674	1	0	0	0	0	1	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0009	1674	1	1	0	0	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0010	1674	1	1	0	0	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0011	1674	1	0	1	0	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0012	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0013	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0014	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0015	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC2_chr3_52519387_52538857	0/0	c0016	1674	1	0	0	1	0	0	copy fasta	NT5DC2	chr3	52519387	52538857
NT5DC3_chr12_103767310_103846234	1/0	c0001	1647	111	57	32	6	3	12	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/1	c0002	1647	105	20	22	44	7	11	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0003	1647	62	0	14	43	2	3	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0004	1647	47	5	2	33	0	7	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0005	1647	46	7	9	21	5	4	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0006	1647	10	4	1	0	1	4	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0007	1647	2	0	0	2	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0008	1647	1	1	0	0	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0009	1647	1	0	0	0	0	1	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC3_chr12_103767310_103846234	0/0	c0010	1647	1	0	0	1	0	0	copy fasta	NT5DC3	chr12	103767310	103846234
NT5DC4_chr2_112716020_112744095	0/1	c0001	1368	147	12	32	77	5	20	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0002	1368	112	21	24	41	9	17	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0003	1368	42	11	16	12	0	3	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	1/0	c0004	1368	22	19	1	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0005	1368	7	7	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0006	1368	7	7	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0007	1368	4	3	0	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0008	1368	4	4	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0009	1368	3	3	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0010	1368	2	2	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0011	1368	2	0	0	2	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0012	1368	2	1	1	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0013	1368	2	0	2	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0014	1368	2	2	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0015	1368	1	0	0	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0016	1368	1	1	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0017	1368	1	1	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0018	1368	1	0	0	1	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0019	1368	1	1	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5DC4_chr2_112716020_112744095	0/0	c0020	1368	1	1	0	0	0	0	copy fasta	NT5DC4	chr2	112716020	112744095
NT5E_chr6_85445083_85500784	0/0	c0001	1725	207	41	33	104	5	24	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	1/1	c0002	1725	72	1	6	53	5	5	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0003	1725	37	31	3	2	0	1	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0004	1725	9	0	0	9	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0005	1725	7	7	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0006	1725	4	4	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0007	1725	3	3	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0008	1725	2	0	0	0	2	0	copy fasta	NT5E	chr6	85445083	85500784
NT5E_chr6_85445083_85500784	0/0	c0009	1725	1	1	0	0	0	0	copy fasta	NT5E	chr6	85445083	85500784
NT5M_chr17_17298373_17352663	1/1	c0001	687	284	88	68	78	12	36	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	c0002	687	61	2	8	45	0	6	copy fasta	NT5M	chr17	17298373	17352663