JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NT5M_chr17_17298373_17352663	0/0	c0003	697	1	0	0	1	0	0	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	c0004	687	1	0	0	0	0	1	copy fasta	NT5M	chr17	17298373	17352663
NT5M_chr17_17298373_17352663	0/0	c0005	687	1	0	0	0	0	1	copy fasta	NT5M	chr17	17298373	17352663
NTAN1_chr16_15032857_15061074	0/1	c0001	933	297	78	43	133	13	29	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	c0002	933	155	14	27	88	5	21	copy fasta	NTAN1	chr16	15032857	15061074
NTAN1_chr16_15032857_15061074	0/0	c0003	933	1	0	0	1	0	0	copy fasta	NTAN1	chr16	15032857	15061074
NTAQ1_chr8_123411774_123447240	1/0	c0001	618	192	56	41	60	12	22	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/1	c0002	618	169	30	32	83	2	21	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	c0003	618	1	0	0	0	0	1	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	c0004	618	1	0	1	0	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	c0005	618	1	0	0	1	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	c0006	612	1	0	0	1	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTAQ1_chr8_123411774_123447240	0/0	c0007	618	1	0	0	1	0	0	copy fasta	NTAQ1	chr8	123411774	123447240
NTF3_chr12_5427108_5500299	0/1	c0001	813	155	52	32	57	5	8	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	1/0	c0002	813	132	17	27	60	10	17	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0003	813	49	17	10	21	0	1	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0004	813	21	4	5	3	1	8	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0005	813	4	0	0	4	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0006	813	3	0	2	0	0	1	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0007	813	2	0	0	2	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0008	813	1	1	0	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0009	813	1	0	0	1	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0010	813	1	0	0	0	0	1	copy fasta	NTF3	chr12	5427108	5500299
NTF3_chr12_5427108_5500299	0/0	c0011	813	1	1	0	0	0	0	copy fasta	NTF3	chr12	5427108	5500299
NTF4_chr19_49056128_49069818	1/1	c0001	633	394	88	74	174	14	42	copy fasta	NTF4	chr19	49056128	49069818
NTF4_chr19_49056128_49069818	0/0	c0002	633	2	0	0	0	0	2	copy fasta	NTF4	chr19	49056128	49069818
NTHL1_chr16_2034820_2052834	1/1	c0001	915	385	97	77	146	18	45	copy fasta	NTHL1	chr16	2034820	2052834
NTHL1_chr16_2034820_2052834	0/0	c0002	915	3	0	0	3	0	0	copy fasta	NTHL1	chr16	2034820	2052834
NTHL1_chr16_2034820_2052834	0/0	c0003	915	2	1	1	0	0	0	copy fasta	NTHL1	chr16	2034820	2052834
NTHL1_chr16_2034820_2052834	0/0	c0004	915	1	0	0	0	0	1	copy fasta	NTHL1	chr16	2034820	2052834
NTHL1_chr16_2034820_2052834	0/0	c0005	915	1	0	0	1	0	0	copy fasta	NTHL1	chr16	2034820	2052834
NTMT1_chr9_129621163_129641135	1/1	c0001	672	413	98	68	182	14	49	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	c0002	672	1	0	0	0	0	1	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	c0003	672	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT1_chr9_129621163_129641135	0/0	c0004	672	1	0	0	1	0	0	copy fasta	NTMT1	chr9	129621163	129641135
NTMT2_chr1_170140959_170173866	1/0	c0001	852	214	34	47	95	9	28	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/1	c0002	852	101	36	23	31	4	6	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0003	852	17	7	5	0	3	2	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0004	852	11	5	1	0	0	5	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0005	852	3	0	0	1	0	2	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0006	852	3	3	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0007	852	3	0	2	0	0	1	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0008	852	2	2	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0009	852	1	1	0	0	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTMT2_chr1_170140959_170173866	0/0	c0010	852	1	0	0	1	0	0	copy fasta	NTMT2	chr1	170140959	170173866
NTM_chr11_131365615_132341822	0/0	c0001	1068	68	36	18	2	1	11	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	c0002	1068	14	4	3	0	4	3	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	c0003	1068	3	1	1	0	1	0	copy fasta	NTM	chr11	131365615	132341822
NTM_chr11_131365615_132341822	0/0	c0004	1068	1	1	0	0	0	0	copy fasta	NTM	chr11	131365615	132341822
NTN1_chr17_9016510_9249000	1/1	c0001	1815	209	79	57	31	10	30	copy fasta	NTN1	chr17	9016510	9249000