Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC2_chr10_99777640_99857594	0/0	c0007	4638	6	6	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0008	4638	4	1	2	0	1	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0009	4638	3	2	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0010	4638	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0011	4638	2	0	0	0	2	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0012	4638	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0013	4638	2	0	1	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0014	4638	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0015	4638	2	2	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	1/0	c0016	4638	1	0	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0017	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0018	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0019	4638	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0020	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0021	4638	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0022	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0023	4638	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0024	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0025	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0026	4638	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0027	4638	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0028	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0029	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0030	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0031	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0032	4638	1	1	0	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0033	4638	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0034	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0035	4638	1	0	0	0	1	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0036	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0037	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0038	4638	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0039	4638	1	0	0	0	0	1	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0040	4638	1	0	0	1	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0041	4638	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC2_chr10_99777640_99857594	0/0	c0042	4638	1	0	1	0	0	0	copy fasta	ABCC2	chr10	99777640	99857594
ABCC3_chr17_50629881_50697253	1/0	c0001	4584	204	31	42	104	5	21	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0002	4584	25	5	8	7	2	3	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0003	4584	22	0	3	16	1	2	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/1	c0004	4584	15	4	2	5	0	3	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0005	4584	8	1	5	0	2	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0006	4584	7	7	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0007	4584	6	5	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0008	4584	6	6	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0009	4584	5	4	0	0	0	1	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0010	4584	4	3	1	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0011	4584	3	0	0	3	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0012	4584	2	2	0	0	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0013	4584	2	1	0	1	0	0	copy fasta	ABCC3	chr17	50629881	50697253
ABCC3_chr17_50629881_50697253	0/0	c0014	4584	2	0	0	2	0	0	copy fasta	ABCC3	chr17	50629881	50697253