JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOL5_chr22_35712872_35734483	0/0	c0006	1302	14	12	1	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0007	1302	5	5	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0008	1302	2	2	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0009	1302	2	2	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0010	1251	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0011	1302	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0012	1302	1	1	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0013	1302	1	0	0	0	0	1	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0014	1302	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0015	1302	1	0	0	0	0	1	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0016	1302	1	1	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0017	1288	1	0	0	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0018	1302	1	0	0	0	1	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0019	1302	1	0	0	0	0	1	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0020	1302	1	1	0	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0021	1302	1	0	0	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0022	1302	1	0	0	1	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL5_chr22_35712872_35734483	0/0	c0023	1302	1	0	1	0	0	0	copy fasta	APOL5	chr22	35712872	35734483
APOL6_chr22_35643446_35673404	1/1	c0001	1032	366	80	66	164	13	41	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0002	1032	6	6	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0003	1032	5	0	5	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0004	1032	3	3	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0006	1032	1	0	0	0	1	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0007	1032	1	0	1	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0008	1032	1	0	0	0	0	1	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0009	1032	1	0	0	1	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOL6_chr22_35643446_35673404	0/0	c0010	1032	1	1	0	0	0	0	copy fasta	APOL6	chr22	35643446	35673404
APOLD1_chr12_12780659_12796466	1/1	c0001	747	391	83	59	190	15	42	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	c0002	747	18	0	7	9	1	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	c0003	747	12	11	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	c0004	747	4	3	1	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	c0005	747	1	0	0	1	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	c0006	747	1	0	0	0	0	1	copy fasta	APOLD1	chr12	12780659	12796466
APOLD1_chr12_12780659_12796466	0/0	c0007	747	1	1	0	0	0	0	copy fasta	APOLD1	chr12	12780659	12796466
APOM_chr6_31650894_31663210	0/1	c0001	567	417	91	80	179	18	48	copy fasta	APOM	chr6	31650894	31663210
APOM_chr6_31650894_31663210	0/0	c0002	567	1	1	0	0	0	0	copy fasta	APOM	chr6	31650894	31663210
APOM_chr6_31650894_31663210	0/0	c0003	567	1	0	0	1	0	0	copy fasta	APOM	chr6	31650894	31663210
APOOL_chrX_84998877_85098315	1/1	c0001	807	255	72	48	106	7	20	copy fasta	APOOL	chrX	84998877	85098315
APOOL_chrX_84998877_85098315	0/0	c0002	807	1	1	0	0	0	0	copy fasta	APOOL	chrX	84998877	85098315
APOO_chrX_23828353_23912938	1/1	c0001	597	258	62	48	111	9	26	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	c0002	597	8	7	1	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	c0003	597	1	1	0	0	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	c0004	599	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APOO_chrX_23828353_23912938	0/0	c0005	597	1	0	0	1	0	0	copy fasta	APOO	chrX	23828353	23912938
APPBP2_chr17_60438158_60531242	0/0	c0001	1758	102	38	22	38	0	4	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	c0002	1758	25	20	5	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	c0003	1758	17	16	1	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPL1_chr3_57222729_57278471	1/0	c0001	2130	227	77	44	60	11	34	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/1	c0002	2130	20	0	11	0	3	5	copy fasta	APPL1	chr3	57222729	57278471