JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NTN1_chr17_9016510_9249000	0/0	c0002	1815	32	4	8	18	0	2	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	c0003	1815	11	1	1	5	0	4	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	c0004	1815	4	4	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	c0005	1815	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN1_chr17_9016510_9249000	0/0	c0006	1815	1	1	0	0	0	0	copy fasta	NTN1	chr17	9016510	9249000
NTN3_chr16_2466297_2479145	1/1	c0001	1743	266	71	55	90	12	36	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0002	1743	7	7	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0003	1743	3	0	0	0	0	3	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0004	1743	3	0	0	3	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0005	1743	2	2	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0006	1743	2	0	0	2	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0007	1743	1	0	0	0	0	1	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0008	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0009	1743	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0010	1743	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0011	1743	1	0	1	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0012	1743	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0013	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0014	1743	1	0	1	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0015	1743	1	1	0	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0016	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0017	1743	1	0	0	0	1	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0018	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0019	1743	1	0	1	0	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0020	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0021	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0022	1689	1	0	0	0	1	0	copy fasta	NTN3	chr16	2466297	2479145
NTN3_chr16_2466297_2479145	0/0	c0023	1743	1	0	0	1	0	0	copy fasta	NTN3	chr16	2466297	2479145
NTN4_chr12_95652807_95795764	1/1	c0001	1887	266	73	34	126	8	23	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0002	1887	20	1	16	0	1	2	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0003	1887	12	0	7	1	1	3	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0004	1887	11	0	1	9	0	1	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0005	1887	4	4	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0006	1887	3	0	0	0	0	3	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0007	1887	3	3	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0008	1887	1	0	0	0	1	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0010	1887	1	1	0	0	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0011	1887	1	0	0	1	0	0	copy fasta	NTN4	chr12	95652807	95795764
NTN4_chr12_95652807_95795764	0/0	c0012	1887	1	0	0	0	1	0	copy fasta	NTN4	chr12	95652807	95795764
NTN5_chr19_48656407_48678017	0/0	c0001	1470	209	37	32	105	6	29	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	1/0	c0002	1470	163	47	35	69	2	9	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0003	1470	11	2	3	0	4	2	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0004	1470	8	0	0	8	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0005	1470	4	3	1	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0006	1470	3	0	0	3	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0007	1470	3	2	1	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0008	1470	2	0	2	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/1	c0009	1470	2	1	0	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0010	1470	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017