JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NTN5_chr19_48656407_48678017	0/0	c0011	1470	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0012	1470	1	1	0	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0013	1470	1	1	0	0	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0014	1470	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0015	1470	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTN5_chr19_48656407_48678017	0/0	c0016	1470	1	0	0	1	0	0	copy fasta	NTN5	chr19	48656407	48678017
NTNG1_chr1_107136039_107489923	0/1	c0001	1620	131	54	30	24	6	16	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	1/0	c0002	1620	14	13	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	c0003	1620	2	2	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	c0004	1620	1	1	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	c0005	1620	1	1	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG1_chr1_107136039_107489923	0/0	c0006	1620	1	1	0	0	0	0	copy fasta	NTNG1	chr1	107136039	107489923
NTNG2_chr9_132157058_132249526	0/1	c0001	1593	118	37	19	45	6	10	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0002	1593	94	34	22	24	3	11	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0003	1593	60	8	17	25	3	7	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0004	1593	49	9	3	31	1	5	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0005	1593	16	3	3	8	0	2	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0006	1593	12	0	2	8	0	2	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0007	1593	1	0	0	0	1	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0008	1593	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0009	1593	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	1/0	c0010	1593	1	0	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0012	1593	1	0	0	1	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0013	1593	1	1	0	0	0	0	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0014	1593	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTNG2_chr9_132157058_132249526	0/0	c0015	1593	1	0	0	0	0	1	copy fasta	NTNG2	chr9	132157058	132249526
NTPCR_chr1_232945611_232988882	1/1	c0001	573	333	76	62	144	14	35	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	c0002	573	38	0	10	21	4	3	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	c0003	573	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	c0004	573	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	c0005	573	1	0	0	1	0	0	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	c0006	573	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTPCR_chr1_232945611_232988882	0/0	c0007	573	1	0	0	0	0	1	copy fasta	NTPCR	chr1	232945611	232988882
NTRK1_chr1_156855865_156886850	1/0	c0001	2391	182	46	19	92	2	22	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/1	c0002	2391	73	12	40	2	9	9	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0003	2391	70	4	10	50	2	4	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0004	2391	13	11	1	0	0	1	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0005	2391	8	0	5	0	0	3	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0006	2391	7	0	0	7	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0007	2391	4	3	1	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0008	2391	3	0	0	3	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0009	2391	3	3	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0010	2391	3	3	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0011	2391	3	3	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0012	2391	2	2	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0013	2391	2	0	2	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0014	2391	2	0	2	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0015	2391	1	0	0	0	1	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0016	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850