JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NTRK1_chr1_156855865_156886850	0/0	c0017	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0018	2391	1	0	0	0	0	1	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0019	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0020	2391	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0021	2391	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0022	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0023	2391	1	0	0	0	0	1	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0024	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0025	2428	1	0	0	0	0	1	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0026	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0027	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0028	2391	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0029	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0030	2391	1	1	0	0	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK1_chr1_156855865_156886850	0/0	c0031	2391	1	0	0	1	0	0	copy fasta	NTRK1	chr1	156855865	156886850
NTRK2_chr9_84664729_85032054	1/1	c0001	2517	145	56	27	42	0	18	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0002	2517	13	3	2	6	0	2	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0003	2517	4	4	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0004	2517	2	0	2	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0005	2517	2	2	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0006	2517	1	0	1	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0007	2517	1	0	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0008	2517	1	0	0	1	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK2_chr9_84664729_85032054	0/0	c0009	2517	1	1	0	0	0	0	copy fasta	NTRK2	chr9	84664729	85032054
NTRK3_chr15_87854751_88261739	0/0	c0001	2520	40	26	3	3	2	6	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/1	c0002	2520	35	15	7	5	3	4	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0003	2520	23	15	1	4	0	3	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0004	2520	19	3	9	4	1	2	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0005	2520	5	5	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0006	2520	3	3	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0007	2520	2	0	0	2	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0008	2520	2	0	0	2	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	1/0	c0009	2520	1	0	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0010	2520	1	0	0	0	0	1	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0011	2520	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0012	2520	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTRK3_chr15_87854751_88261739	0/0	c0013	2520	1	1	0	0	0	0	copy fasta	NTRK3	chr15	87854751	88261739
NTSR1_chr20_62703836_62767771	1/0	c0001	1257	263	64	63	95	10	30	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/1	c0002	1257	16	6	1	4	0	4	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0003	1257	7	3	0	4	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0004	1257	6	2	2	0	2	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0005	1257	6	4	2	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0006	1257	4	3	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0007	1257	3	0	0	3	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0008	1257	3	3	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0009	1257	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0010	1257	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0011	1257	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0012	1257	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0013	1257	1	0	1	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771