JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NTSR1_chr20_62703836_62767771	0/0	c0014	1257	1	0	0	0	0	1	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0015	1257	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR1_chr20_62703836_62767771	0/0	c0016	1257	1	1	0	0	0	0	copy fasta	NTSR1	chr20	62703836	62767771
NTSR2_chr2_11653178_11675195	0/1	c0001	1233	394	49	65	221	15	43	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0002	1233	28	23	5	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0003	1233	10	9	1	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0004	1233	6	3	1	2	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0005	1233	3	3	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0006	1233	3	3	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0007	1233	2	0	0	2	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0008	1233	2	0	0	2	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0009	1233	2	2	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0010	1233	2	0	1	0	1	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0011	1233	1	0	1	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	1/0	c0012	1233	1	0	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0013	1233	1	0	0	1	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0014	1233	1	0	0	1	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0015	1233	1	0	0	0	0	1	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0016	1233	1	1	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0017	1233	1	1	0	0	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTSR2_chr2_11653178_11675195	0/0	c0018	1233	1	0	0	1	0	0	copy fasta	NTSR2	chr2	11653178	11675195
NTS_chr12_85869295_85887992	1/1	c0001	513	416	90	79	183	16	46	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	c0002	513	1	1	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	c0003	513	1	0	1	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	c0004	513	1	1	0	0	0	0	copy fasta	NTS	chr12	85869295	85887992
NTS_chr12_85869295_85887992	0/0	c0005	513	1	0	0	1	0	0	copy fasta	NTS	chr12	85869295	85887992
NUAK1_chr12_106058345_106143954	1/1	c0001	1986	192	46	36	70	4	34	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0002	1986	93	4	12	60	7	10	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0003	1986	24	21	3	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0004	1986	12	7	3	0	0	2	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0005	1986	7	0	1	4	2	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0006	1986	5	5	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0007	1986	3	2	0	1	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0008	1986	3	0	0	3	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0009	1986	3	0	0	3	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0010	1986	3	3	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0011	1986	2	1	1	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0012	1986	2	0	2	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0013	1986	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0014	1986	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0015	1986	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0016	1986	1	0	0	0	1	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0017	1986	1	0	0	1	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0018	1986	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK1_chr12_106058345_106143954	0/0	c0019	1986	1	1	0	0	0	0	copy fasta	NUAK1	chr12	106058345	106143954
NUAK2_chr1_205297063_205326745	0/1	c0001	1887	158	54	23	58	7	15	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0002	1887	122	5	29	62	7	19	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0003	1887	33	25	4	3	1	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0004	1887	29	1	2	25	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0005	1887	15	2	7	0	2	4	copy fasta	NUAK2	chr1	205297063	205326745