JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUAK2_chr1_205297063_205326745	0/0	c0006	1887	8	0	0	8	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0007	1887	6	0	4	0	0	2	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0008	1887	4	0	2	1	1	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	1/0	c0009	1887	2	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0010	1887	2	2	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0011	1887	1	0	0	1	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0012	1887	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0013	1887	1	0	1	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0014	1887	1	0	0	0	0	1	copy fasta	NUAK2	chr1	205297063	205326745
NUAK2_chr1_205297063_205326745	0/0	c0015	1887	1	1	0	0	0	0	copy fasta	NUAK2	chr1	205297063	205326745
NUB1_chr7_151336812_151383449	1/0	c0001	1848	258	81	46	82	9	39	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/1	c0002	1848	120	8	25	73	5	8	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0003	1848	15	3	4	5	2	1	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0004	1848	11	0	1	9	0	1	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0005	1848	2	2	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0006	1848	2	0	0	2	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0007	1848	2	0	2	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0008	1848	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0009	1848	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0010	1848	1	1	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0011	1848	1	1	0	0	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0012	1848	1	0	0	0	0	1	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0013	1848	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0014	1848	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUB1_chr7_151336812_151383449	0/0	c0015	1848	1	0	0	1	0	0	copy fasta	NUB1	chr7	151336812	151383449
NUBP1_chr16_10738842_10774351	1/1	c0001	963	376	83	62	185	18	26	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0002	963	38	7	7	12	0	12	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0003	963	4	4	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0004	963	2	0	2	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0005	963	1	0	1	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0006	963	1	1	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0007	963	1	0	0	1	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP1_chr16_10738842_10774351	0/0	c0008	963	1	1	0	0	0	0	copy fasta	NUBP1	chr16	10738842	10774351
NUBP2_chr16_1777960_1794186	0/0	c0001	816	153	21	35	70	12	15	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	1/0	c0002	816	99	4	20	61	1	12	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0003	816	62	15	11	22	1	13	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/1	c0004	816	58	6	5	40	1	5	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0005	816	32	31	1	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0006	816	12	12	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0007	816	6	1	5	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0008	816	4	0	0	4	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0009	816	2	0	0	0	0	2	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0010	816	2	2	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0011	816	1	0	0	1	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0012	816	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0013	816	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0014	816	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0015	816	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0016	816	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0017	816	1	0	0	0	1	0	copy fasta	NUBP2	chr16	1777960	1794186