JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUBP2_chr16_1777960_1794186	0/0	c0018	816	1	0	0	0	0	1	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0019	816	1	0	1	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0020	816	1	1	0	0	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0021	816	1	0	0	1	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBP2_chr16_1777960_1794186	0/0	c0022	816	1	0	0	1	0	0	copy fasta	NUBP2	chr16	1777960	1794186
NUBPL_chr14_31556404_31866224	1/1	c0001	960	258	78	47	85	12	34	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	c0002	960	4	4	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	c0003	960	2	2	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	c0004	960	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	c0005	960	1	1	0	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	c0006	960	1	0	1	0	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUBPL_chr14_31556404_31866224	0/0	c0007	960	1	0	0	1	0	0	copy fasta	NUBPL	chr14	31556404	31866224
NUCB1_chr19_48895312_48928372	1/1	c0001	1386	352	76	62	166	12	34	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0002	1386	15	1	9	0	3	2	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0003	1386	15	13	2	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0004	1386	7	7	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0005	1386	2	0	0	2	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0006	1386	1	0	0	0	1	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0007	1386	1	0	0	0	0	1	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0009	1374	1	0	0	1	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0010	1386	1	0	0	1	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0011	1386	1	0	0	0	0	1	copy fasta	NUCB1	chr19	48895312	48928372
NUCB1_chr19_48895312_48928372	0/0	c0012	1386	1	0	1	0	0	0	copy fasta	NUCB1	chr19	48895312	48928372
NUCB2_chr11_17271739_17337211	1/1	c0001	1263	164	62	39	39	4	18	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0002	1260	95	4	13	70	2	6	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0003	1263	91	0	19	58	2	12	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0004	1260	4	4	0	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0005	1263	2	0	2	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0007	1263	1	0	0	1	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0008	1260	1	0	0	1	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCB2_chr11_17271739_17337211	0/0	c0009	1263	1	0	1	0	0	0	copy fasta	NUCB2	chr11	17271739	17337211
NUCKS1_chr1_205707822_205755182	1/1	c0001	732	368	96	64	154	14	38	copy fasta	NUCKS1	chr1	205707822	205755182
NUDCD1_chr8_109235919_109339087	0/0	c0001	1752	126	17	27	69	7	6	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	1/1	c0002	1752	117	7	23	69	3	13	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0003	1752	82	51	13	9	2	7	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0004	1752	14	0	1	0	2	11	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0005	1752	9	9	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0006	1752	4	4	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0007	1752	3	0	0	0	0	3	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0008	1752	2	2	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0009	1752	1	1	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0010	1752	1	0	0	1	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD1_chr8_109235919_109339087	0/0	c0011	1752	1	1	0	0	0	0	copy fasta	NUDCD1	chr8	109235919	109339087
NUDCD2_chr5_163441526_163465102	1/1	c0001	474	425	91	76	200	14	42	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD2_chr5_163441526_163465102	0/0	c0002	474	1	1	0	0	0	0	copy fasta	NUDCD2	chr5	163441526	163465102
NUDCD3_chr7_44374119_44495658	1/0	c0001	1086	188	41	37	69	10	30	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	c0002	1086	26	17	6	0	0	3	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/1	c0003	1086	17	0	4	3	4	5	copy fasta	NUDCD3	chr7	44374119	44495658