JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NUDCD3_chr7_44374119_44495658	0/0	c0004	1086	3	2	1	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	c0005	1086	2	2	0	0	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDCD3_chr7_44374119_44495658	0/0	c0007	1086	1	0	0	1	0	0	copy fasta	NUDCD3	chr7	44374119	44495658
NUDC_chr1_26916743_26951871	1/1	c0001	996	251	85	62	46	16	40	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	c0002	996	2	0	2	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDC_chr1_26916743_26951871	0/0	c0003	996	1	1	0	0	0	0	copy fasta	NUDC	chr1	26916743	26951871
NUDT10_chrX_51327822_51342525	0/1	c0001	3275	121	13	31	55	5	16	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0002	3276	22	5	4	11	0	2	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0003	3270	22	5	1	11	2	3	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	1/0	c0004	3274	18	1	4	11	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0005	3271	12	0	1	10	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0006	3270	10	5	2	1	1	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0007	3269	7	0	0	2	0	5	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0008	3273	6	6	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0009	3271	6	6	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0010	3276	5	0	0	4	1	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0011	3274	5	4	1	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0012	3274	5	3	2	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0013	3271	5	0	2	2	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0014	3277	4	0	0	4	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0015	3271	4	0	0	4	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0016	3272	4	3	1	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0017	3270	3	0	0	3	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0018	3273	3	3	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0019	3275	2	2	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0020	3274	2	0	1	0	1	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0021	3275	2	0	2	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0022	3274	2	2	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0023	3272	2	0	0	1	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0024	3274	2	0	2	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0025	3272	2	2	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0026	3276	1	0	1	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0027	3270	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0028	3275	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0029	3276	1	0	0	0	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0030	3278	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0031	3277	1	0	0	0	1	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0032	3272	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0033	3276	1	0	1	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0034	3275	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0035	3277	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0036	3275	1	0	0	0	0	1	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0037	3275	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0038	3269	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0039	3273	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0040	3273	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0041	3273	1	0	0	1	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0042	3274	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525
NUDT10_chrX_51327822_51342525	0/0	c0043	3272	1	1	0	0	0	0	copy fasta	NUDT10	chrX	51327822	51342525